HsaINT1045165 @ hg38
Intron Retention
Gene
ENSG00000221926 | TRIM16
Description
tripartite motif containing 16 [Source:HGNC Symbol;Acc:HGNC:17241]
Coordinates
chr17:15683036-15684300:-
Coord C1 exon
chr17:15684196-15684300
Coord A exon
chr17:15683158-15684195
Coord C2 exon
chr17:15683036-15683157
Length
1038 bp
Sequences
Splice sites
5' ss Seq
AGGGTGTGT
5' ss Score
4.51
3' ss Seq
TCCAGAACCTCTTACCACAGTTT
3' ss Score
2.06
Exon sequences
Seq C1 exon
CTTTCTCTGGAGGATCTCCGCGCGTGGCGAGTCTGTGTCCTCCCTGTCCCCCAGAGCAGACACCCTCTCTGTGTCTGGACCGGGGAGGAGCAGACGCTGGACAGG
Seq A exon
GTGTGTGTGTTCAGCAGTGGATTGTCAGACTTGGGGTCCCGGCTGCTCCCTTTTGGGTCTCTCCCCGGGCCCGCTGATCTGACTGTAATTCCTTCTGCTGGAGCTAGGGTTCGGCCACCTTGACGCGCCCCCTCTGCCCCTGGAGCGTGTCTTTGGGTTTTGTGTGTGTGGGAGTGGGGTGTATGTGTGTTTCTTATCCGAGACACCTCTGGGTCGTTTGCTTGGAAACCGGCTGAGGGCCCGCATACCCTGGAGCATTTGGTTGCAAAGTGAGGCAGGTAGCGCCCAAGGCTCCTGTACCAGGGCCAGGTTAGGCACCAACGCGTCCCTTATGTCTCTGCAGCCTGCAGTGTGGTGGAACCGTTTCATAGACTGAAGTGTGAACGTAGGAGGGGATGGATATCAGAGATCTGTTTATCCACATTTTCAGAGAGTGGTATTGCTCTGATGTGAGCGTAGGCAGGTTACTCTCTGTGTCTCGTGTTCTTTACCTGTAATTTGAGGTTTGTTGTACCTACTATTAAGTGGTGGTTGTGAGGATTAAATGGAATTTTGACATGCAACAGTTGACACAGGGCCAGACACCAAGTAAGGGATCAATCAGTTGTTGCTTTTATTAATAGTAGGCATCCATCTGCCCATTTGCACGTAAGAAGGAAACACCCAAGAATGAAAAGTAGCTTGTTGTAGGTCACCCAGCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATCAGGCACAGTATCCTTACTGTTGTCTGTAACTGTCTATGTTCCCAGTGTCTGACTCTGCAGGGCCCTAGTGGTATAAAGGTACTGAGACTTGCCTGTGTTCAGGGCTTCCTGAAGATTAAATGGCTGCCGAAGTTCTTGAGTTTAGCTTTAGCTCAAAAGATACTGCGTCAGACTCTGCGTTCTGAGTAGAGTCTCAGAGAATGAAAAAAGAAATACAATGAAAAAGGGGAAAACTTCAATCCAGAACCTCTTACCACAG
Seq C2 exon
TTTCTGGTAGAATGCTGGCAATTTCCAGGAAGATACGTGGAGAACGGAAAGGTTGCTACACCCAAATAGTGAAGCAAAGGCTATGATTATGGAGGATTGGACCTGCAAACTCCAGAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000221926:ENST00000578237:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATCTCCGCGCGTGG
R:
GTTCTGGAGTTTGCAGGTCCA
Band lengths:
214-1252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains