HsaINT1045697 @ hg38
Intron Retention
Gene
ENSG00000137267 | TUBB2A
Description
tubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]
Coordinates
chr6:3156044-3157526:-
Coord C1 exon
chr6:3157407-3157526
Coord A exon
chr6:3156153-3157406
Coord C2 exon
chr6:3156044-3156152
Length
1254 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGGTTCTTTTTTCATTTCAGTTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCCCGCCGGTCCACGCCGCGCACCGCTCCGAGGGCCAGCGCCACCCGCTCCGCAGCCGGCACCATGCGCGAGATCGTGCACATCCAGGCGGGCCAGTGCGGCAACCAGATCGGCGCCAAG
Seq A exon
GTGGGCTCACCGCCACGGAGGGGCCCGGGGTTGGGACCGAGGGTGCGGGCTGGGGCCGGGGCGGGGGCTGGAGGCCGCGGCGGCCCCGGGCTGGCCGGGTGGCACATTCCGCGGCGAGGCCGCCGGGCGGGGTCCGGGAGGCTGCATGACCCGCCAGGATGCCCGCAGCGCCGCAGCTGTGTGTGCGTTTAATCGGGGGCCTTTCGATTTCCCTGGGACACAGCCCTTCTGCGGGACGCGGTTGGCATTCCCCTGGGTGTATTTGTCTCAGAAACTTGGGTCGGGGGTACGGTCATATTTATTGCGCTAGCTTCATGTGAATTTAATTTGTATATTTTTCTCTACGGTTTGAATGAAAACATGCAGTGTCACTGGACTGGCAGATGTAACAGAGGCGTCCCTTTGGGTCGTACAGGCAAGGGTGTTAGATAAATTCCCTTGCTCGGGCACTGTCTTGACATGATGACATACAACGCGATAGTCTTGCTGCCAGTCCCCGAGGCGGCAGGTGACTGCGCTGGGTGGGGGCTGCAATTACCGACCGCTGTGTGGGAGGCAGCAGCGGGTCTGGTGCATGGGTGGGGGCGGGCGCCAGTACAAGGACGTGGTCTCTTTGAGAACCGCCATGTTGCCCACCCAGCCTCCCCGCCGCAAATTCACAATGCAGCCAGCGCCCTCACGATGGCCAGCTCCTTCCACTGCCGCCCAGGTGCCCTCCCAGGCTCCTGCTGCCCTTCGCCCAGTCCCTCCGGTGGTCAGTGCCAGCATGTAGATCGGTGGCTTAAACCTGCACTGTTGCAGGAGTGCCTGGGATCTGTGCCAAGAGAGCTTGATCCCTGGAGGCAGCCACAGAGTGGGTCCCCCTGTCCTTGGCCTGCCACGACCCATCAATCATCCCGGATGCAATGGCATTCAGCCCTGCCTGGGGTGACACAGCCTCCCTGTACCCCTTCTCCACTTCTCTACTCTCCCCACCCTCTCCCTAGAAGGGCATCTGCTGTGTCCCCTCCTCCTCCAGGGCCCCTCCCAGCCTTTCAGTCTATCCCCATAATATGGCCGATGCTCTGCGGATTTTCAAGCCCCTCAGCAGCGGCTGCTGCAGGAAATAGGGGGTGCAGCTCTTTGCTCTCTGTCTAGCACTTACTAACTGTCTGACCACAAAAGCCCCTGTTCCAAGGACATGGGAGGAGGACAAGGCCATCCTTAGTGACATTCAGGATGCAGAGCCATGGTGTGGTTCTTTTTTCATTTCAG
Seq C2 exon
TTTTGGGAGGTCATCAGCGATGAGCATGGGATCGACCCCACAGGCAGTTACCATGGAGACAGTGACTTGCAGCTGGAGAGAATCAACGTGTACTACAATGAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137267:ENST00000333628:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains