HsaINT1046989 @ hg38
Intron Retention
Gene
ENSG00000186919 | ZACN
Description
zinc activated ion channel [Source:HGNC Symbol;Acc:HGNC:29504]
Coordinates
chr17:76079702-76079994:+
Coord C1 exon
chr17:76079702-76079746
Coord A exon
chr17:76079747-76079887
Coord C2 exon
chr17:76079888-76079994
Length
141 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
TGGTGCCCTTGTGTCCCCAGTCC
3' ss Score
9.81
Exon sequences
Seq C1 exon
GACATCCTGCGATACACAATGTCCTCCATGCTGCTGCTTAGGCTG
Seq A exon
GTGAGCTCCTATGCCTGGGGAGGTGGGATGGGAAAGCCCAGCTGAGTCCAGCTCAGAACTACCAGCCTTCATCAACATGCTGAGCTTAGGGGCATGGATATGTGGAGAGCAGGAGCCTCAGTGGTGCCCTTGTGTCCCCAG
Seq C2 exon
TCCTGGCTGGACACTCGCCTGGCCTGGAACACTAGTGCACACCCGCGGCACGCCATCACGCTGCCCTGGGAGTCTCTCTGGACACCAAGGCTCACCATCCTGGAGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186919:ENST00000334586:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(7.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCGATACACAATGTCCTCC
R:
CCTCCAGGATGGTGAGCCTT
Band lengths:
146-287
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains