HsaINT1047027 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100736483-100737080:+
Coord C1 exon
chr7:100736483-100736629
Coord A exon
chr7:100736630-100736808
Coord C2 exon
chr7:100736809-100737080
Length
179 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTGGGCTCTGCCTCCCCCAGAGG
3' ss Score
7.59
Exon sequences
Seq C1 exon
ATGTCCTCACCCAGTGTGATTTTGAGGATGACGCCAAACCCCTCTGTGACTGGTCCCAAGTGTCCGCAGACGATGAAGACTGGGTTCGAGCCAGTGGGCCCTCTCCCACCGGCTCCACCGGGGCCCCCGGGGGGTACCCTAACGGAG
Seq A exon
GTGAGGGGCTATGGTTTCCAGGGGACCATGAGCAGGGAGGTGGCTGGGAGGCGGGAGTGGCTAGATGGAGAGAGAAGGGAGGCAGCCAGACCTGGATGCCTGGGCTCTGAGAAGGGGATGGGTGGGGGCAGCCCTCAGAGGTGGCTGGGCCTCAGTGTCTTGGGCTCTGCCTCCCCCAG
Seq C2 exon
AGGGCAGCTATCTGCATATGGAATCGAACAGCTTCCACCGTGGGGGAGTGGCCCGCCTGCTCAGCCCCGACCTATGGGAGCAAGGCCCCCTCTGTGTGCACTTTGCCCACCACATGTTCGGGCTGTCTTGGGGCGCCCAGCTCAGGCTGCTGCTGCTCTCGGGTGAAGAGGGCCGCCGCCCCGATGTGCTCTGGAAACACTGGAACACCCAGAGACCCTCCTGGATGCTCACCACCGTCACTGTGCCCGCAGGGTTCACCCTGCCCACCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(26.8=88.0)
A:
NA
C2:
PF0062918=MAM=FE(54.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGAGGATGACGCCAAACCC
R:
CGAACATGTGGTGGGCAAAGT
Band lengths:
247-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains