HsaINT1047031 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100793820-100794258:+
Coord C1 exon
chr7:100793820-100794018
Coord A exon
chr7:100794019-100794119
Coord C2 exon
chr7:100794120-100794258
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGA
5' ss Score
5.06
3' ss Seq
CTGGCCCTTCCCCTTTCTAGCTG
3' ss Score
10.23
Exon sequences
Seq C1 exon
CCATGGAGTGTCCAGCAGGTACCATATATCAGAGCTGTATGACACCCTGCCCAGCATCCTGTGCCAACCTGGCAGACCCCGGGGACTGCGAGGGCCCCTGCGTGGAAGGCTGCGCCAGCATCCCAGGCTATGCCTACAGTGGCACCCAGAGCCTCCCCTGGCTGACTGTGGCTGCACCAGCAATGGCATCTACTACCAG
Seq A exon
GTCTGAGCTGGCAGCAGGAGGCCCTGGGGAGCAGAGGCGCCAAGGAGAGCCAGACCAGGGATGGAACTGGAACGTCTCCTCCTGGCCCTTCCCCTTTCTAG
Seq C2 exon
CTGGGCAGCAGCTTTCTGACTGAGGACTGCTCTCAGCGGTGCACCTGTGCCAGCTCACGGATCCTGCTGTGTGAGCCCTTCAGCTGCAGAGCGGGGGAGGTCTGCACCCTGGGGAACCACACCCAAGGCTGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(3.4=3.0),PF127142=TILa=PU(16.4=13.4)
A:
NA
C2:
PF127142=TILa=PD(80.0=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGTATGACACCCTGC
R:
CAGCTGAAGGGCTCACACAG
Band lengths:
256-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains