HsaINT1047034 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100797366-100797623:+
Coord C1 exon
chr7:100797366-100797465
Coord A exon
chr7:100797466-100797576
Coord C2 exon
chr7:100797577-100797623
Length
111 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATTCCCCCATGCCTTCTAGAGA
3' ss Score
6.17
Exon sequences
Seq C1 exon
CATCTAACCTGGTGGGCGTCCTACTGGGACTGCTGGTGCCTGTGGTGGTCGTACTACTGGCCGTGACCAGAGAGTGCATTTACAGAACGAGGAGGAAGAG
Seq A exon
GTGAGTCCTGGGAAGGAGAGAGGAAGGGCGGGTGGGGTGTGCAAACCGGGAAGCGGCTGGGCCCGTAAAGGGCCACTTGGGGACCCATGTCTATTCCCCCATGCCTTCTAG
Seq C2 exon
AGAGAAAACGCAGGAGGGAGACAGACTGGCCAGGCTGGTGGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.265
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTAACCTGGTGGGCGTC
R:
CTGTGTCCACCAGCCTGG
Band lengths:
147-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains