HsaINT1047037 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100737262-100738613:+
Coord C1 exon
chr7:100737262-100737349
Coord A exon
chr7:100737350-100738460
Coord C2 exon
chr7:100738461-100738613
Length
1111 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CCTTCTTTCTTTCCTCTCAGTCT
3' ss Score
10.84
Exon sequences
Seq C1 exon
CTGATGTTTGAGGGAACACGGGGTAGCACTGCCTACCTGGACATCGCCCTGGATGCCCTCTCTATCCGCCGGGGCTCCTGTAATCGCG
Seq A exon
GTGAGTCCCTGTCCCTCCTCCCGCCTGCCCTCGGACCCTTTTCTCTCCGTCCTTGCACAACAAGAAGAGGATCCAGGGCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAAGAGATAGAGACCTTTCTGGTTAACACGGTGAAGCCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGCGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGTGGAGCTTGCAGTGAGCCGAGATCGTGCCACTGCACTCCAGCCTTGGCGATGGAGTGAGACTCCGTCTCAAAAAAAAAAAAAGAAGAATGAGAAAGGAGATGAGGAGCTGGCTGTATTGGGTCTGCCAGGTAGAGCTATTAGGGCTTTGACTCTGGAAGCAGCCGTGCCTAAAGAGAGGTCTCGGCCCAGCACAGTGGCTCAGGCCTGTAATCCCAGCACCTTGGGAGGCCAAGGTGGGAGGATGGTGTGAGGCCAGGAGTTTGAGATCAGCCTGGGCAACATAAGGAGACCCCCATCTCTACAAAAGAATTTATTTATTTATTTATTTATTTATTTGAGACGGAATTTCACTCTTGTCACCCAGGCTGGAGTGTAGTGGCACGATCTCGGCTCACTGCAACTTCTGCCTCTTGGGTTCAAATGATTCTCCTGCCTCAGTCTCCCAAGTAGCTGGGATTACAGGTGCCCACCACCATGCCTGGCTAATTTTTGTATGTTTAGTAGAGCCGGGGTTTCATTGTGTTGGCAAGGCTGTTCTAGAACTCCTGACCTCAGGTGATCCACTCACCTCAGCCTCCCAAAATGCTGGGATTACAGGAGTTAAGTCACCGTGCCAAGAACTTTTTAAAAATTAGCTCGGCATGGTGGCGCACACCTGTAGTCCTAGCTACTTGAGAGGTTGAGGTGGGAGGACCGCTTGAGTCCAGGAGTTCGAGGCCGCAGTGAGCTATGATCACACCACTGTACTCTAGCCTGGGTGACAGAGACCCTGTCTCTAAAAAAGAAGAAAACATTATATCTTCCCTTCTTTCTTTCCTCTCAG
Seq C2 exon
TCTGTATGATGCAAACATGCAGCTTTGACATTCCAAATGACCTCTGTGACTGGACCTGGATCCCAACTGCCTCCGGGGCCAAGTGGACTCAGAAGAAAGGGTCATCAGGAAAGCCAGGCGTGGGGCCTGATGGCGACTTCTCTAGCCCTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.269
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(17.1=93.3)
A:
NA
C2:
PF0062918=MAM=PU(28.5=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTTTGAGGGAACACGGGG
R:
TACCAGGGCTAGAGAAGTCGC
Band lengths:
239-1350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains