HsaINT1047292 @ hg38
Intron Retention
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chr5:43067581-43068217:+
Coord C1 exon
chr5:43067581-43067786
Coord A exon
chr5:43067787-43067969
Coord C2 exon
chr5:43067970-43068217
Length
183 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TACAAACTCCTTTCTTACAGGAA
3' ss Score
9.38
Exon sequences
Seq C1 exon
AGTGAAAGACTCAATGCCTCCTGACCGAGGCTTCAGGCCTGCCCCGGCAGCTAGGTACCTCTCCAGGGGATGGAACTCTGTGGGAACTGCTATTTAATTCTGATGGTTAACTCTGTCAGATGGCCTTGATATATGGGAATAATCGTTGCAGGAGGGTAGGGGAAATAAGAATCGCAAGACTCTAGCACAGGACGTGTGGATTGATG
Seq A exon
GTGAGGCCTTTGCTCCCTCTCCCCTTGAAATCCTCAAAGGGCAGTTCCCGATTTCTATCACCTTTGAAATTCATCCCTGATGTCTTCTCCATCTTTGGGAAGTGCAATGCAATTTCAAGCTCTTGAATCTTCCCTCTCCCACATTTGTCAAATATACTGACGCTACAAACTCCTTTCTTACAG
Seq C2 exon
GAAACCTGAAACTGCCATTGAGCAGAAGGAAAACATCCCTTTCCAGAACCTTTCTCGTTTTTCTAAAAATCTGCACTTTTGGAAGTGATCCCCCAAAGAGACCTCCAGACTCTACCATGAGTGTCTCCAGCTGAACTCATCGTGTCTAATCCTCACCCTAGCTTATCCTGTTCAAATCATTTCCATCTTTTTCTGGATGAACCTGGGCGGATGTCAGACCAGAGAAGAGCACAGAATGTACCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262:ENST00000499046:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAAGACTCTAGCACAGGA
R:
CGCCCAGGTTCATCCAGAAAA
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains