HsaINT1047306 @ hg38
Intron Retention
Gene
ENSG00000179909 | ZNF154
Description
zinc finger protein 154 [Source:HGNC Symbol;Acc:HGNC:12939]
Coordinates
chr19:57700988-57702788:-
Coord C1 exon
chr19:57701238-57702788
Coord A exon
chr19:57701146-57701237
Coord C2 exon
chr19:57700988-57701145
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTCCTTTCTGATGAGTTAGGCC
3' ss Score
1.23
Exon sequences
Seq C1 exon
ATGTTCATCATCAGAAGCAGCACCTTGGAGAAAAACATTTCAGAAGCAATGTGGGCAGAGCCTTGTTTGTGAAGACCTGCACATTCCATGTGTCAGGGGAGCCTTCCACCTGCAGAGAAGTTGGGAAGGACTTCCTGGCCAAGTTGGGATTTCTCCATCAACAGGCTGCTCACACTGGGGAGCAATCAAATAGCAAAAGCGACGGTGGGGCCATCAGTCACAGAGGAAAAACTCATTACAACTGTGGAGAACACACAAAAGCATTCAGCGGTAAACACACACTTGTTCAGCAGCAGAGAACCCTCACTACAGAAAGATGTTACATATGCAGTGAATGTGGGAAATCCTTTAGCAAAAGCTACAGTCTCAATGACCATTGGAGACTTCACACTGGAGAAAAGCCTTATGAATGTCGAGAGTGTGGGAAGTCCTTTAGGCAAAGCTCTAGTCTCATTCAGCACCGGAGAGTTCACACTGCAGTACGACCTCATGAATGTGATGAATGTGGAAAATTATTTAGCAACAAGTCTAACCTCATTAAACATCGGAGAGTTCACACTGGGGAAAGGCCATATGAGTGCAGTGAATGTGGGAAATCCTTTAGCCAAAGGTCTGCACTCCTTCAACATCGGGGAGTTCACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAGTTTTTTACATATCATTCCAGTCTCATAAAACACCAGAAAGTTCACAGTGGATCCAGGCCTTATGAGTGCAGCGAATGTGGGAAGTCATTTAGCCAAAACTCTAGCCTCATTGAACACCATAGGGTTCACACTGGAGAAAGGCCTTATAAGTGCAGCGAATGTGGGAAATCCTTTAGCCAAAGGTCTGCACTCCTTCAACATCGGGGAGTTCACACTGGGGAGAGGCCTTATGAGTGCAGTGAATGTGGGAAGTTCTTTCCCTACAGCTCCAGTCTCCGAAAACACCAGAGAGTTCACACTGGATCAAGACCCTATGAGTGCAGTGAATGTGGGAAATCCTTTACTCAAAATTCCGGCCTCATTAAGCACAGGAGGGTTCACACTGGGGAGAAGCCTTATGAGTGCACGGAATGTGGGAAATCCTTTAGCCATAACTCCAGCCTTATTAAACATCAGAGAATTCATAGTCGATAAAAGCCTTATGAGTGGCAAATGTGGAAAATCTGTTAGCACCCTGGAGAAAGTCCTTGAGTACACAGTGAATGTCAGAAAGCTTCAGCTGAAGGCCATATCTCATTGAGTGCCACACAGTTCACAAGGGAAAGACACTTTTGATATGTAGGGATGTCCAGTTGATATAACAGCTCTGAAGGAGATCCCTTATGAGGGTGGCATCAGCCTGAATTGAACATCCTATATCTGAACATCTGCATAAATTCCAGGTATGTGTGAACTGCATTGCACCTTTTGCCCTGCCCAGGGCCCATGTCAGATTTATGTCTCTGCTGATACTATAGTGGAAGCCATTTTACCTCTACTGCCTGGCAGGTGACCACCAGTGTGCACCACTCACCCATCCCAGTGTATTCAG
Seq A exon
GTAAGTGAACCTTGGTGTTCTGTTCATGGGAGGAATTTGTAAATAGCCTAAGCATTTATTCCGTTTTTTTTTTTTCCTTTCTGATGAGTTAG
Seq C2 exon
GCCATGGACCTGACCCAGTTTGGCCCAGAGGACTCTGCTGGTGACCTGAAAAGAGGGACTACATATTTCAGGATATTGTTGGTCTCACATGACTCTTGATAGAGTTTGCCAGCCTTCAAATCACCAACTGTGGGAACCAACTGCCTCTTATTGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179909:ENST00000451275:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGAACTGCATTGCACCT
R:
CAAACTGGGTCAGGTCCATGG
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains