HsaINT1047333 @ hg38
Intron Retention
Gene
ENSG00000263072 | ZNF213-AS1
Description
ZNF213 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:50505]
Coordinates
chr16:3128672-3132103:-
Coord C1 exon
chr16:3131747-3132103
Coord A exon
chr16:3129654-3131746
Coord C2 exon
chr16:3128672-3129653
Length
2093 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTCTGGTGTGTTCTCTCTAGGCT
3' ss Score
10.04
Exon sequences
Seq C1 exon
GTGGAGACTGGACCTCAGAAGAGGGAGTGGGTGCCCCGAGAACTCACAGCTAGCGGACAGTGGAAAGGGCAGGAGCCGGACCAAGGTGAGGACAGTGGAACTGAAGGCCGCTGGTTACCTCTCCTGCCCTCCGCTGGCCACAGTGGAGAAGACAGCCCCTCCCTCCTGCTCTGACCTGACAGTGTTCATCCATCGCCCTGTATTAGCGAAGAACAACATCAAGCTGGCTAGCAAGGAACTGTATACAGGGTCCAGCTGGGTATCACACTGGATCTCACCCAAAGCTTAGATGTGATCCAGCTCAGTATCACAAAGCAGAACGAAAAGGATGTGTTTGGGCTGAGAGGCCATACATTG
Seq A exon
GTAAGTGGCACATGAACTGTATTTTCTATTGAGCATTGCTGGTATATGGCAAATTTGCATAAAATTATATTGAAATTGACTACCGGATTGCACTTTCTTGTTCCTTCTGATAATTTTTCACGTGTTCTTTTTCTTTCTTACTTTAGATGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTCCAGTGGCGCGATCTCGGTTCACTGCAAGCTCTGCCTCCCGAGTTCATGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACCTGCCACCACGGCTGGCTAATTTTTTTTTTTTTTTTTTTGAAATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGCGATCTCAGCTCACTGCAAACTCCGCCTCCCGAGTTCATGCCATTCTCTTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGAGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGCATGGTCTCTATCTCCTGACCTCGTGATCCACCTGCCTCGGCCTCTTTTTTATATTTTTAGTAGAGATTTCACTGTGTTAACCAGGATGGCCTCGCTCTCCTGACCTCATGATCTGCCCGCTTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGTTATTTGTTTATTTATTTATTTATTTTTTGAGACCGAGTCTTGCTCTGTAGCCCAGGCTGGAGTGCAGTGGCGCCATCTTGGCTCACTGCAACCTCCACCTCCCACATTGAAGCAGTTCTCCTGCCTCAGCCTCCCAAGTAACTGGGATTACAGGAGCACACCACCACATCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTCGCTAGGCTGGTCTGAAACTCCTGACCTCATGATCCACCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCAATTCTGCTGCCTCAGCCTCCCAAGTAGCTGTGATTACAGGTGTGTGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTTGCCATGTTGCCCAAGCTGGTCTCAAACTCCTGACCTCAAGTGATCTACCCGCCTTGGTCTCCTAAAGTGTTAAGATTACAGGCATGAGCCATCGGGACCGGCCCACTGTTTTTTCTCGCTAGAAAATACAGTCTAAAGTGGCCAGGTGCGGTGGCTCACGCCTGTAACCATCCTGGCTAACACGGTGAAACCCCAGCTCTACTAAAAATACAAAAAATAAGCCGGACGTGGTGGCAGGCACCTTGTCCCAGCTACTCGGCAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGATGCGGAGGTTGCAGTGAGCTGAGAACACGCCACTGCACTCCAGTCTGGATGACAGAGCAATACTCCGTCTCACAAAAAAGAAAATATAGTCTATAAATAATGAAGAAAGTAAAGTGAACCTGGGAGGTGGAGGTTATAGTGAGCTGAGATCATGGCACTGCACTTCAGCCTGGGCAGCAGCAAGACTCCGTCTCAAAAAAAAAAAAAAAAAAGAAATATGCGAGCTGCTAAGCTAGGCAGTTCTGGCTCAAGATCTCTCATGATACTGCAGACACCACACCAACGAGGACCCCAGTCCTCTGGCACTGGAGGACCCACTTAGAAGGCGGATGACTCACGTGGCTCTTGGCAGGAGACCTCAGTTCCTCCCCACATAGGCCTCCCTATAGGACTGCTTGAGTGTCCCGTTTACCAAATGATCTAAATATGTTCCGGTTTTGATTGGCTGCTCTGCAATGTGGGCCGTTATCTAGCTGATTCGGTGGGGCCTGAAGTGTCAGTTCCTGCCGCAGGGATGTTATATGGAACCTTTGGCAGGCCGCTACAGACGAATCATAATATAAACCTGTGCTAGTTATTGATTACGTCCCAGCTCCTGCGTTGCCTGCTCTGTGAAATGGTTCTGGCCCTTTAGTTTTTCCTTTACCAGCTGGCATGATCTTAAGCTTTGTCAGTAGAGGGCGCTGGAGAGACATTGCAGGAGACGAGTTTCCCTTCCTGCTTCTGGTGTGTTCTCTCTAG
Seq C2 exon
GCTCCGGCATGACGGGTGACTTCTTCCGAGTCTGGCTTCTGCAGCACACAGGGCTTCGCCAGCACCCAGCTCCTGCAGCATGGGCAGCTCCTGTGACAGCAGGCGCCCGCAGCCTGCAAAGCGTCTCCAGTGCCGCCGCCTCAGTGAACCTCAACCAGCGGCACCTAGCAGCTTTCTCTGCCACCCTCTTCAGGTAGTTCTGTAGCAGCGCGTTTCTCATGAGACACTTCCCTGTGAGCAGCTTTTTCTACCCTTGAGGATGGATTTCCAGCAAATTCTGCCCATGTGGTACCACAGCCACTTCTCTGCCATTCAGTGAAACTGCCGTTGTGCCCTCTTCAAGGTCTGGATCTAAGCCCAGGGACCAGGAAACCTCTTGCTTGAGTGCTGGAACTCAGGCCAGAAGGTATGGCTGCTGCTATGTGCTGTGACCAGAGAATCAGAGTTCTCTTTACTTCTTACCAGCCAACCTCTTGAAAATGCCTTTTTGTTTTTTGTTTTTTTTTGAGACGGAGTCTCGCTCTGTTGCCCAGGCAGTGCAGTGGCTCACTGCAACCTCCGCCTCCTGAGTTCAAGTGATTCTCCTGCCTCAGCCTCACAAGTAGGTGGGATTACAGGCATGTGCCACCACGCCCAGCTAATTTTGTATTTTTAGTAGTGACGGGGTTTCTCCATGTTGGTCAGGTTGGTCTCAAACTCTCGACCTCAGGTGATCCACCTGTCTCAGCCTCCCAAAGTGCTGGGATTACAGACGTTAGCCAGAGCGCCCAGTCTAAGCCCTTTATAGCTTAATTCTATATATTAAATTTTCCCAGTTCAAATTACTGTGTGCTTCCCTTCTCCTGATTGGACCTTGCTTGATACAAAATTAGTACAAGGAGTGGTCTCAAGAGATAGATGCACAAAGAAGGGATATGGGGACGGATTTGGGTATTTGGGCTTGAGTGCAGACTGAGCTCCTTGACAATGAGAAATAGGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263072:ENST00000571963:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains