HsaINT1047341 @ hg38
Intron Retention
Gene
ENSG00000263002 | ZNF234
Description
zinc finger protein 234 [Source:HGNC Symbol;Acc:HGNC:13027]
Coordinates
chr19:44141606-44142367:+
Coord C1 exon
chr19:44141606-44141733
Coord A exon
chr19:44141734-44142313
Coord C2 exon
chr19:44142314-44142367
Length
580 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGG
5' ss Score
3.53
3' ss Seq
ACAGCTTTCTCCTTCCCCAGCCT
3' ss Score
7.18
Exon sequences
Seq C1 exon
ACATTCCACGGTAGTTTCTTCCAGTTCCGCGACTCGCGGGCCCCTCCTAATGTCAGGGACTTAAGATTGGGGCTCGCTGGGACCTGGTGGTCCGGTTATGGGAAAAGAAGCCTCGTGGGAGAGCAGAG
Seq A exon
GTTTGGTGGGGCGAGGGCGGCGGCTTTTGTTGTGTCAGCGGAGCCTTCTTGGGCTGGGGCTCCCCTCGTGTCCCGCGGCGGGAGGCGGGGGGCATTGGGACTTGGTTGGGTCGCGTCTCGCCTGGTTTGAGGGTTTCCGGGGCTCTGAGCTCGCCCACTCCGCCTCCCTGCACTCCAGGCGCGCAGTCACTTTTTTACAGTGCAAGGTTGGCGTGTTAATCTCCCTGGGCCTCTCCTTGCTGTTCTTTAAAATGGGGACGTTAGGACCATCTTTGTAGAATCGTTTTGGTAACTGGAATAGGTTACACAACACAAACAGTCCCTGTCACTTGGTGAGTGGTGGTTTCTTGTTACTTTCCCACGAAACCTGTTAGGTCCCCCGGTGGGGTCAGAGCTCCAGCAGCAGGGGCCTCAGCCCTTATCTCTGATCCCTGCAGGACGCTGGACGATCCCGGACGCCTTCTGACCTCTTTTTAGGCAGGCGAGGGTTGCGTCCACTTCCACGAAGGGAGGGGAGCATTTAACTTTTCTCAGGGACAGCGACCCAGTCAGGATGTTTCACAGCTTTCTCCTTCCCCAG
Seq C2 exon
CCTGAAAAAGGACTGCGCGGACTGACTTCTTGGCTACTGAAAGCAAAGCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263002:ENST00000426739:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCCACGGTAGTTTCTTCCA
R:
GTGGAGCTTTGCTTTCAGTAGC
Band lengths:
182-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains