HsaINT1047342 @ hg38
Intron Retention
Gene
ENSG00000196150 | ZNF250
Description
zinc finger protein 250 [Source:HGNC Symbol;Acc:HGNC:13044]
Coordinates
chr8:144889581-144890074:-
Coord C1 exon
chr8:144889933-144890074
Coord A exon
chr8:144889695-144889932
Coord C2 exon
chr8:144889581-144889694
Length
238 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
ACTTCCCTCCCCACGAGCAGGAC
3' ss Score
5.94
Exon sequences
Seq C1 exon
CCCCTGTCGTTCCAGGCCAAGCTGACCTTCGAGGATGTGGCTGTGCTCCTCTCCCAGGATGAATGGGACCGCCTGTGCCCTGCTCAGAGGGGTCTCTACAGAAATGTGATGATGGAAACCTATGGGAATGTAGTCTCATTGG
Seq A exon
GTAAGCCACCTTAGCAGGCCTCGTCTATGTATCTGCGTATTGGACTGGGGTGGGGGCTTCTCAGGGTACGGGGCCTGGGACAGGCTGGTCCTGGAGGTTTGCTCTCATCACCTCTCTGGGTGCTCAGCTCCAGCAGAAGATCAGTCCTGTCCATTTTCATGTCCCCACAAGTGGCTTGGGCAGGGGGAGGGGGCTCTGTAAATGTTGTGTAAACAAAGACTTCCCTCCCCACGAGCAG
Seq C2 exon
GACTTCCAGGATCCAAGCCTGACATAATCTCCCAGCTGGAGCGAGGGGAAGATCCCTGGGTCCTGGACAGGAAGGGGGCTAAGAAGAGCCAGGGCCTGTGGAGTGACTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196150:ENST00000292579:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=85.4)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCGTTCCAGGCCAAG
R:
GAGTAGTCACTCCACAGGCCC
Band lengths:
252-490
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains