HsaINT1047376 @ hg38
Intron Retention
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:29003513-29004214:-
Coord C1 exon
chr6:29003946-29004214
Coord A exon
chr6:29003595-29003945
Coord C2 exon
chr6:29003513-29003594
Length
351 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CATTCTGTGTCTTGCAATAGGTT
3' ss Score
9.31
Exon sequences
Seq C1 exon
GGAAACAAGATGTGAGATCACAGCGGTTTAGTGTTGCTAATGAACCCCAAATCCAGGGCAGTGTTTGACACATTAAGCCAAACAGTAGCGGCACTGTGGGTCAAGAAGGGCCCTTTGGCTGGCACCACCAAAACATGTGTTCTCCAAAGGAGGCTGGCATCAACTGGAGCCACTTCACAGCTTGTTTGAGAACTGGATCTGACCAGTAGGAAGAAACCAGGACAGCAGTGGAAGACTGTTAAAGAAACCTGAGTAAAAAGATGCAGGAG
Seq A exon
GTAAGAAGAGGAGGGTCTGTGATACATCACAAGGAGGAAGAAGGAGAAGTGAGTCCAAGAAAGAAGGAAAGCAGTGTGAGTGGAGGTGTGTCTGACTCTAGATACTGTTGGAGGTGTCTCCTCCTAGATACTGTTTTTGCTGCTTGACCTGGTGATCATTAAAGCTTTGTAGTTGTAGATGCCATTTCTAGTTTTCATAAGGTATTAGGAACTGAGTCCATTATTTTCTCCCTTCTTTTGGTATTTCTGGGAGACAGTTTCTGTGGATAGACCTGTATGGTTGCTTGCATCTTCCTATGTATTTTTCTCACCTTCATAACTTTCCTGAATTCATTCTGTGTCTTGCAATAG
Seq C2 exon
GTTGTGCTGTTGGATGAGAGTTCAGGACCACCAAGCCAGCTGCTTTGGACCCGCCAGGATACCCAGCTCCCTCAGGAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935:ENST00000377179:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACAGCGGTTTAGTGTTGC
R:
CTTTCCTGAGGGAGCTGGGTA
Band lengths:
334-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains