HsaINT1047377 @ hg38
Intron Retention
Gene
ENSG00000197935 | ZNF311
Description
zinc finger protein 311 [Source:HGNC Symbol;Acc:HGNC:13847]
Coordinates
chr6:28999956-29003594:-
Coord C1 exon
chr6:29003513-29003594
Coord A exon
chr6:29000048-29003512
Coord C2 exon
chr6:28999956-29000047
Length
3465 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
GCTTACTTATCTTCCCTCAGCTC
3' ss Score
7.59
Exon sequences
Seq C1 exon
GTTGTGCTGTTGGATGAGAGTTCAGGACCACCAAGCCAGCTGCTTTGGACCCGCCAGGATACCCAGCTCCCTCAGGAAAGCG
Seq A exon
GTGAGATACACAGGAGATTGTGGCAGGAGTCACGGCAGCTGAGAATGTAGTAAGGACACAGAGTGGGTGGAAAATGCCACACTGGGGCCCAAAAATCTGTTCATTAATGAGCATTTATAGAAAGTCTTATTTTGTTTCTATACGAGGCTTGGATCAATATCTAGAGGAACTAAATATTCAGTTTCTGTCAGTATCTTAAATTTTGAAAAAAATCAGTGTGTAAAAGATTCTACAAAGCAATTTATCAGAAAGAATCAATGCAGTCAGGCATTTACTGTTTGTATAACCTGAGATATATGGTAAATAGCGTACATATTTGCACATATTTTACACTTATAAAACTTGTGGTATAATTCAGTAATTCCTACCCAAACATAATTTTGCCAACATGTAAAATTTGAATATATACAATTTTACTTCTGCAGACCTTTCTGGAGCCCTGATACTTTTAAATGATGTATAGATATCTCCAAAATATAAAATAAAGCAGTGACAAAAGAAGAAGCAAAAGTTTTCCCATTGAAGCCTTGTGCTCTTTGGTGGCGTATGTGAGGAGGAAAAGTGGTTAAGATTTGTATAAAAGCTGATGGTAGGCCGGGTGCGGTGACTTATGCCTGTAATCCTAGCACTTTGGGAGGCCTAAGTGGGTGGATCACTAGAGGTCAGGAGTTCATGACCAGCCTGGCCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGTAATGCACCTGTAACCCCAGTTACTCAGGAGGCTGAGGCAGAAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGACTCTGTCTAAAAAAAAAAAAAAAAAAATTGCTGTTGGAGGTGCAACCTAGGAGATAGTATATAGCAATTCAGGAGTCATAAAATCAAACCCAGAAAGGCATAGACTTTTGGACAGAGGAGTAGGCACATTCAAAAGTAAGCTTTTTAGTATATGCTACCTGCAAAAAATAAAAATAAAATGTGTTTCTAGATATAGTGTTGAAACATCTAGAGGAGGAATCCTGAGATATCTGCTGTACAAGGGATCACAAATGAGAATTAATAATATAGAACATAAATTTTTTATAGATTTAGAAATAAAAAATAATAGCTATTGCTAAACTCGGATGCACGAGTCTCCCAGTCTTCTTTTTCTCAAATGGTCGTGAAATCTGCTGTGGTGGATTTTCAGGGTCAGAAATTCTGTAGCCACCTATCATATAATACAATACAAATGTATTAATCTTATCCCACAAGATATCTGTATACTGCTTTAACAAAAAGTTTTATGTTGTTTTTTCATGTAGCCTGTTTCCTAAATTCATTTTTAACTTAAGAGGAATAACCTTTCAATTTCTAAAGCTAAAGCTAAAAAATAAAGCTTATGAATCACTATGAGTGACAGACTTTCCCAGTTGTGAAGAAGATATGGTAAAAACCAGTAGGGAATGAGTTACATAGGGGTATGCTTTTGTCAAAGTTTCTCTAAGGGTACATTTAAGACATGTGCATTTCATTATATGTAAATTTTACCTCGAAAAAGAAGGTAAACAAATGTTGAACTTCCAGTTAATGATATACATGTTAAACTGTTTAGGGGTGAGGTGTACTGATGCTTTCAACTTACTTTGAAATGATTCAAAAAATAAAATACATTAATGAACAGAGAGAGGAATAGATAAATGGATAAGTATGTGATAAAGCAAATATTGCAGAACGTAAATTGTGGAATGTAAGTGATTGGTATATGGATATTTACTATATAATTTTTTCAACTTTTCTATATACTTGAAAATATTCATAATAAAATAATGGTTGAAAACATCCAATTGAGAGCTTTAAGTGTGTTAATGTTATAAGGAAAAGAACTGTTATGTAACATTAACAAGGCACAAACATGTGTCTGCTGTGAGTTGTGTGCCATCCAGATGAGTTTAGACTTTTTGAGACAGTTATAAAGGAGCTCGGAGCTTTTAGAGTGAGACAGTGGAAAAACTGTATGGAACCACCATGACTGAGATGCAGCCTTGGTCTTGGTCAAAAGCTATAAGTAGCTGAAACTAAAGAAGAGTCTTCTTGGGCAATTTCAGTGAAAAGAAATCAGCTTGGTTCTAAATCGGTTTTTCGTAAAAATGGAATGATAGTCTTGGAGGTCTAAATCCAAAGGGTGATTATAAAATCTTACCAATAGATTACTTTGACCCTGCTGGTGTCTTAAAAGCAGACAGCAATTATTCAGATTTGGACTTGGCGATGTGTTGATAAACTATCAAGAAAAATAAGGCACCTTAAACATTGAAGCTACAGAAAGATTGAGCTGGCCTGCAAGGAATAAAGTCAGGCCCTATTAATTAGTAATATGAACTACTTCTCAGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGATGTCAGGAGATGGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCATGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGTGTGAACCCAGGAGGTAGAGCTTGCAGTGAGGCAAGATCACGCCACTGCACTCCAGCCTGGGAGACAGAGCGAGACTCTTAAGTCTCAAAAAAAAAAAAAGAAACTACTTCTCACCCAATCATATGGATTATACCTGAACACTTGGACACTCTTTATAAAGTTTCTTTTGCATTTTAAAATGCTCTGTGTGCTATACTATATTGACATAGGGAGGATAACTCAGTACTAGGGAATTAGTAGGAAAAATGTGCAAAATCGGGAAGAATGATTCTTCTCTAAGAGGAATAAGGAAAAAAATTTGTAACTAACTGGAGGTAGACCAGCCATTAAGTTACCTGAAAAAATAAGCTTTGGTCCTATCCCTGGATGCTTCTGTTCAACACATATGCACACACACACATACGCGTGCATGCACACACTCTTTTTCACCCTCCTTCTACCCCAAGTATTTTGGAAGAAATGACTTCAGTATTCAAATACAGGAAGAAGGTCTATTCAAAACCAGGGAATAAGTGATTTGGGCCTTTTTACCAGATCTGTTTGGGGAGGGGGAAAGTTTATTCCAGGACAAAGACCACAGGAAAACAGTAGGTGAGACAGGAAAAGAGTGCATTTCCAAGAGCTGCCTTGGCTGCTGTGCCAGGGCCTGATGCCCAACACTGGAAGTTGAGACTAGAAAAATAATGAAGAGGAAGGATACTGTAAGGCAGTAGCCTAAAGCCCTAGGTTAGAGCTGCAGAAGCTTCTACATTTGAGGAAGAGAAGACGAATGCAGGAGATTTCATTAATACTGTGCTATATTGACTCTTGGCTTACTTATCTTCCCTCAG
Seq C2 exon
CTCTATTACCTGCTCCATATCCTGCCTTCACTAAAGATGGAAGCCAAGGAAACCTGCCGCAAGCAGATATCACACTAATGAGCCAGGCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197935:ENST00000377179:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.710
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains