HsaINT1047399 @ hg38
Intron Retention
Gene
ENSG00000130844 | ZNF331
Description
zinc finger protein 331 [Source:HGNC Symbol;Acc:HGNC:15489]
Coordinates
chr19:53538143-53539282:+
Coord C1 exon
chr19:53538143-53538296
Coord A exon
chr19:53538297-53539215
Coord C2 exon
chr19:53539216-53539282
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCCGGTTCTGTTTTCCCCAGGCC
3' ss Score
10.71
Exon sequences
Seq C1 exon
ACGCACTTGCGTGGGAGTACGAGGCTGACGCGGCGGCCCTGTCCCCGTAACTGTGACACGGGTGCACGCGAGCGTCATTGGGGGCGATGGGGGCCGTGCTGGGTGCGCGTTTGCACCAGTGACGCAGCCGCTGCATCTCCGCCAGTCCGCGCAG
Seq A exon
GTGAGATTGGTGCGCGTGGCTCCGAGGGGAGACGGGCACGGGGCTTCTGACGGTGACGCACTTGCTGGAGAGTGTGGGGTGACACAGCCGGGCTCTCCCCATAACTGGTGACCGGGGGTGCTCCAGAGGCTTTGGGTCAACGCAGCCCGTGCCTGTGAACCTCGGCGGTGCGTCCCTGGGACTCTGCTCCGTGAGGTGCGCTCTGGGGGTTGTGCGGGGGCAGCGGTCGGGACGGGTCTCCGTGGCCCACGGATGCACCTCTGCACCGTGTGGGGTGGTGGGGCCCGTAGCATGGCCGTGCTGGGCGTTAGTGGGTATGAGGGGCGCAGATGTGTCTCAGGACAGAGTGAGCTGTGGTGAGGCTGAGCTGTGCAGACTTGTGCTGGGATGGGTGATCGGGCCTTCTGGGTGACGCAGGTGTGTGTGACAACACAACCTGTAGCTTCAGCGTCTCTGTGCTGGGATGGATGATCGGGCCTTCTGAGTGATGCAGGTGTGTGTGACAGTGCAACTTGTAGCTCCAGCGTCTCTGCTGCTTCCCCTGCCTTCACCTCCTAACCAAGCGGTACCTGCCTGAGAACAAGGGCCGCGGAGGGACGTGAGCGCCTGAGCCTCGCCTGGAAATTCACCAGCAAGAAGGCAGAAACAGCCATGAGGTGACGCTTTCAGAGCCAGAAGTGCTGTGCATGCAGGCCACCTGAGTGACAGGGGACGGTGGCCTCAGGAGTAGAATTCCTCCTGTAGAGGGACAGGTCCCTGATGTGGGAGACAGGGAGGGGGGCAGCTCCACGCGTCATCATCTCAATCGCCACAGCGTGCTCTTCAGGAATCTCCCAGAAACTCCATCTCGGGGCCTCGTATTTCTCATTGGTTTTATTAGGTATGGCAGGTGTTACCCTTCCGGTTCTGTTTTCCCCAG
Seq C2 exon
GCCAGCATCCTTCAGAAAAAGCATCCCCGAGGAGGAAGACGAATCGTTAAACATCTGAAAGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130844:ENST00000511154:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTGCGTGGGAGTACGAG
R:
TGACCCTTTCAGATGTTTAACGA
Band lengths:
217-1136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains