HsaINT1047417 @ hg38
Intron Retention
Gene
ENSG00000197937 | ZNF347
Description
zinc finger protein 347 [Source:HGNC Symbol;Acc:HGNC:16447]
Coordinates
chr19:53153733-53159031:-
Coord C1 exon
chr19:53159009-53159031
Coord A exon
chr19:53153794-53159008
Coord C2 exon
chr19:53153733-53153793
Length
5215 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
GCACTTTCCTGTTACCTAAGGAA
3' ss Score
3.25
Exon sequences
Seq C1 exon
GGGTGCGGGTGACGCCGCCGAGC
Seq A exon
GTGAGTGTCCCTCAGTATGGATTAAACTTGCGAACCGCCGTGCCCCGTTTCCGCAGCCAGTTCCCGGGCTCGCTACAGACCTTTTTTTTTTTCTTTTTTTTTTTTTTTGGTGAGACGGAGATTTACTCTTGTTGTCCAGGCTGGAGTGCAATGGCGCGATTTCGGCTCACCGCATCCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGTGCCACCACGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGATCTCGAACTCCTGACCTCAGGTAATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGGTTACAAGCGTGAGCCACTGCGCCCGGCAGCTACAGACCTTAAGATCCCCGCACCGCGCCCTCCACCCCAGCTGACTCGCGGTGTGGGTTCGGAGTCGCTTCTCTTTGGGTTGAAGTAGCTCTGAGGCTTCTCCCTGTCCCCGGCCTTTCGCGTCTTCCTCCCGCTTAAAACCCTTTCCTGACCCCTCCTCCCGCCCCGGGCTTTTTAAAGTCCTCGCCCGCGAGGTGGATTCCCGCCCTGGGTGCCTCCCAGCCTCGCCCTCGTCGGCCCCTGGAGCGCAGCTCCTCAGCCCCGGTACCGGCGAGGCCGCGTCCTCTGCCTGGTCCTGGCATCCTGCAGACCCCACCCCTCTTCTAAGGCGCCGTCGCCCCGCCACCTCCCTCCTCCTCGTGCCGGGCCCTGCTGCTCCCCAGGCCTCCCCTTCGCAGTCCCCGCTTCTCCTGAGCCCGCGCTGGGGAGGTGCCCGGGGCCTGTCCTGTGACACCCGGTGTTCTTGCCTGCCCAGCTCCAGCCCCTGGAAAATGCGCTCCTCCAAGATGCAGGCGTCTTAGTCCAAACCTTCCTGTGAATGTGTGGACCAAGGGGATTAGCAGGTAGAGAAAGGGGCAGAGACAGAGAGAGAAGTAGAAAAACTGAGAGGAAAGAGTGAGGGAAACCCGTAACCAGATGGCAAAGTAGAGGATGGGCGAGGGATTTGCAGATGGTAAGAGAAGGAGCTGAGAAGGCAGAAGGAGAAAAGCAACTGGGGAAATGTAGAGAAAAGCTCGATGTCCAGAGACATGAAGGACAGCAAGGTAGGGAGAGGGCCAGAAAGTGGGAGGCTCCTCAGACAGAGTCCGGGAGAGGAGGAGGGATTTGGAGCCAGGGCAGACAAGCAGCGTGGTGCTGGGACAGCAAGAGGGGACAGCCGGTGACGAGGAGAGCAGAAGGAGAACCACAGCAGGGGGAGGCCTGGGATCTGGGGGTGCCAGAGAGTGGGGCAAGAGGTGTAGAAGGGAAGAGGAGATTCAACAGAGGGAGCAGAGATGGGAGAAGAAAGAGGCAGAAATATATGGAGACTGGGGACAATGAAAAGACTGGGGAGAAAGAGGAATCAGAGTTGAAACAAGGCCCCAGAATGGGACAGAACAGGTGCAAGCGGAGGAAGAAGGGGAGAAATAGCAGGAGATGAGAGGGGCTCAGAACGACGCGCAAAGAACCAGGGGAAAAACACAGAAAATAAAAAATAAGCTAATGTGAGAATGAGAGCTATGTAGAGGATGAGGGAGGGAAACACACAGTATGGAAGCAAGAGAGGGACCCTGAGTCCAGGTGAGTGGTGCGTTGATTAGATGTGATGATGACATTGTGACATTGGTTTCTGGGTTTAAAATAATGCAACACATTTAAAATACGTTTACTTAAATTATGCAGTTGCAAATGAGAATGGAAGAAACTCCTTTATGTAAAATGCGTAACACGTGCATTTGACAATTATTAGTATTAGGGTATAGCTTCATTTGCAATCACTATTCAAACCAGAGGGCAGTGACTTCGCTCATTTAGTTTTGAGTCCACCCACTTCCCTTTTCCTGGAATAGGGTAGGGTGTGGGCGAGTGTATGAACTAAGAGGAAAAAATATTTTTCCTTTGATTTTCTTTCCTGTCACACTCAATACAACAGGGCACATTCTACACAGTGTCTCGCCTCCACTCACGAAAATGTGTGCGGATTTCTCCCACCAACAACCCGTTCTCTATCAGACACTAACTGAGTGTCGTATAGTTTAACTCAATTCTGAAACTCTCTACCTGGAGTTAGCATCAGATCCCACTGATTGAGGCTCAGTTCCACGAAATTGCCCCCGCATCAGGTGCCAGTTGTAAGTCTCCCGTTGGTACCTGAACTTCTGAGCGACCAGCTATACACTGGGGATTCCCTTGACATCCCCCTCCCCACCACCTCAGGTTCTATTAATTTGTGAGGGCGGCTCAAAGAACTCAGGGAAAACACTTCACTTAGTTTACACATTTGTTATGAAGGATATTACAGAAGATACAGATGAACAGTCAGAAGGAAGAGCTGTCCTAGAAAGTTAATCAAAGCCGAGGAGGGGTTAAGAGAACCACAGTATTTATCAGGTCACTCAAAAGTATAAGTGACAGTTACCACTGGCATACTGTGTCTGAAGTGAGGGGCAGTTTTAGACTGAGCTCTGAACCTGTAGCACCTCGTCATGCAGTCTTTTTTTTTTTTTCTTTTTGAAACAGTCTCGCTCTGTTGTCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCAAGGCAGCCTCTGCCTCCCGAGTTCAAGCGATTCTCCTGCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACATCCAGCTAATTTTTGTATTTTTAGTAGAGACGAGGTTTTGCCATGTTGGCCATGCTGGTCTCTAACTCCTGGCCTCAAGTGATCCTCCTGCCTTGGCCTCCCAAAGTGCTGGGACTACAGGCATGAGCCACTGTGCCCGGCCCATGCTGTCTTGTAGATAATATCAGAGTTGAATGAAATTGTAGGACCCCCGCCTAACCCCCCCCCCCCCCCGAGCTGGGAGTCCCCTGGGAGTCCCCTGGTCATTGTGGGAAAAGCCACACACACATTTTGGTGACTAGAGGTGAAGTATTCTGTGTTTAGTGTGAGAGCAGAATGTAGAGTTGGGTTTTTTCCTATCTCAAAGACTAAAGGAAAAGACCTCCAAGTGGCCCACCCACCTGTCAGGACCTGTGATCTCTACTCAGTAGTGACTGGGAATGGCCTGTTCCTGCTTCTGGCTGCTGCTGGCCCTGCAATTGTGTACCATGTACCAGCCTCACTCACAGTCTCAGGACAATATGCGTGCCATCAATTTTAACTTTTTTTTTCCTTCACAATCTGTAAAGCTTTCAAAATTTTAACTTCAAGGGAATTCATCCCTGTACCTAGGGAGTGGTGTTCTCCATTAAGACACGTACACAGGGCTGGGCACAGCGGCTTACACCTGTAATCACAACACTTTCAGAGGCCAAGGTGGGAGGATTGCTTGAGTCCAGGAGTTCGAGACCAGCCTGGGCAACATAGCAAGACTCCGTCTCTACGAAAAATAGAAAAAAATAAGCTGGATGTGGTGGCTTGCACCTGCGCTCCCAGCTACTTGCAAGGCTGAGGTGAGAGAATCGCTTGAACACGAGAGCTTGAGGCTGCAGTAAGCCATGTTCATGCTGTCACACTCTAGCCTGGGCAACAGAGTGAGACCCTGTCTCAAAAACAAAAAACAAACACACACACACACACACACACACACACACACACACACACAGAATAAAGTCTTTTTTTCTTCTACGCTCCATCTTTAAAACAAAAAATACTCTAAATTGGCCAGGCACGGTGGCTGACGGCTGTAATCCCAGCACTTTGAGAGGCCAAGGCAGGTGGATCCCTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACACTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATAGTGGCACGCGCCTGTGATCCCAGCTACTCTGGAGGTTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTACGGTGAGCCGAGATCGCAACATTGCACTCCAGCCTGGGTGACAAGAGTGAGACTTCATCTCAAAAAAAAAAACAAAACAAAACTCTAAACTACCTTTCAGTCTGTAGTAAGTACTCTTCTATGCTCCGTTTAAGAGCACAATACACTACAATTTTTTTTTTTTTTACTTTATGTTCAATTCTTGCCTTCAGTCCTTGCTTGAACTCTTGCTTGAATCAAGCTCTCATACCCAACATTCCACTGATCCTTTCTTTTTCATTTACCAGTGATGGATCCATTTGAAATTCAATGTTTAATTTCCTGTCATCTTTCCATTCCTATCAGTAGCATGTGGCACAGTTGCTCACTTTCTCTTCTATTTTCTTGGCTTTTAGGACATCCCGTTAAGCTTTACACATCTATTTGTTGTAATTTTCTTGTTGCCTCCCTAATCACATTATGCTTTCCTCTTCTTGTGTCTCCAGAACTTTCTGTTCTCTGAACGTGGGCTTAGTCCTCCAGCCACTTTTTTCTCTGTCCGCACTCATTGCCTTTCCTTATCAACTCAGCTCATGGCTTTCAACCCCACCTGCACAGCTTCATGTCACCTGCAGGCCTCTCCTGTGAACTCTAGATCCAGCATCTAGGCCTCCCAAAGTGCTGAGGTTACAAGACGTGAGTGACCGTGCCTGGCTAAATTTATTACTTTTTTTTTTTAAGAGAAATGGGGTCTCACTATGTTGTTTAGGCTGGTCTTGAACTCCTGGCCTCAACTGATCTTTCTGCCTCAGCCTCCCAAAGTGCTAGGATTATAGTGTGAGCCACCACGTTCAGCCTCTACCTTTTGTTTCTGAGGCCTGAGATTGGCCTGCAATCCACAGAGAGGTGAGGGAGGCTGTTCTCTGCATGGGGTTTGGTCAGGGCTTGGTCTGTGCCCTGAATGGGGGAGCTCAGTCCAGCCCAGCTCCCAATTGCTGCAGCGTGTGTGTGGGCTTCTCCAGGAGGAGAGTGGGTTCTGAAGAAAGGGGTCAGAAACTCACTTATTGATCTTCCCATAGGAGCTTCTTGTCCCTGCATTGCCCTGGTGCAGTGGGCAGCTGAGACCATCTTTCCACAGGGTGAGGTCTTCCCTGTGTGTGTGTGTGATTGTGGCATAGGAAGGGGATGTGTTGATTCTGAGCAATAAACAGCACATTTTGGATATTCAATATTGACTTCTAAAGGCACTTTCCTGTTACCTAAG
Seq C2 exon
GAAGAACCCTTGAAGAAGAGGAAGAGGAAAGAAAGACAAGTCAGGCATGGCTCTCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197937:ENST00000334197:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.113
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains