HsaINT1047465 @ hg38
Intron Retention
Gene
ENSG00000249087 | ZNF436-AS1
Description
ZNF436 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:25122]
Coordinates
chr1:23369218-23371839:+
Coord C1 exon
chr1:23369218-23369513
Coord A exon
chr1:23369514-23371138
Coord C2 exon
chr1:23371139-23371839
Length
1625 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
CTGTTTCTTTTATTCCTCAGGCC
3' ss Score
10.82
Exon sequences
Seq C1 exon
CTGCTACAGGGGCTCCCAGCGGCCTCCCGCACCGAAGGGACCCTGGGCGTCTGAGGCCCTGATCCGGGCGGGCCTTCAGGATGTTAGCAGTCCCTGTCCGGTTGAAGGTAGGAAGCCGAAAACCCGAGTGGGGGACGAACAGACTTACCTCCTGTCCCGCAAAAGATCCACTAGATCGTCGTCTCCAAAACCTGAGAGACCGCGAACGGGTTCCAGAGCCGCAGCGTTCTCTCAGACCTGGCGTTCAGGAAGATTCTAGAGAGCACGGGCAGGTCCCGGAGGTCTCAGACCCGCAG
Seq A exon
GTAGATCTCGAATTCGTAGACTTGCAGGCGAAGCCCAGATATCGTAGGCTGATCCTAAAGACTCAGATTCCCGAGGCCTCAGACTCGCAGGCAGCTCAGAAACCACAGGCTCATAGGCAGATCCCTGAGACCACAGAGGCTGGCCGAGAAACCACCAGCAACTAAGCTGCATTCAGCTGGAGTTCCTCGGAACGGGAGGACTCGCAGCTCTCCCTTTCCCCAGCCAGGATGAGGGAATTAGACAATGGAAGTCGAGCACTGGGGAAAGCAGGCATTCTGCGTGGGGAAGAGCTCCCAGCTCGCTGTAGCCTTGGAGAGGGAAGTGATGGAAAAAGAATATAGCAGCTTATTAGGGACTCCCACCCTCTTCAAGTTATAAATATCCCCAGAACCTTGGCTACGTGCCCGGAAGCCTGTTGTCTCTAACTGTACAGGAGACTTCTCTGCCTGGGCTGGGAAAGGGGCCTTTCTTTTGTTTTGCAGATAGATCCACCCACTGAGGAACTTGAAAATTTTTTTCAAACATAACTCCAGGCCTTGCTTTTATTAGTGAGTGTCCTGTTCCCAGTGCCCGGTTATTTATGATTAAATTACTGAAGTGTCTAAAAAGAACAGAAGGACCCACCCCAGCCATAATGCAGACTTTCCCATTCCTTCTCTTTCCACCCGCAACTGTGGGGCTAAGAATTCTTAAGATGTCACAGAATTATACCATCCTACCTCATCTAAAGTCGATCCGAGGCTGGTCCGATGGTAGTGGGTTACCAGAACTTAATAACATTAATAACTCTAAAGTTAGTATACAACCCCCCACTGCTAAATTTGGCTATAAAAATAAAATTGATCTGAGCACCATATAAAATGGAATCCTGGAGGGTCCCCTAGAGGCAGTATCCCCAGTGGAAAGAGCGTGGGCCTCAAGGTCAGACAAGCCTGGTTTGGAATCCAGGCTGTGTATCCTTTGGAAAGTCATTGAATCCAGGCCCATTTCCTTTTCTCTAAAATGAGGGTCATCATACCTAAGGATGTTGTGAGGCGTGAGTGAGATGATTAAAGCGTTCCAGAGAGTGCGCTCTTGGATGATAGCCGTTACTTTTTATTAACCCTGGCTTTGGTGGTAAGGGAAACTTCCAGAAATGCTTGTGGGTATATTGGATAGCTCAGAAAATCTGGGAAATCAAAGTGGCTCAATAGCTGTGAGGAACTGTGGGTGACTTTATCCTCACATCGTGTTTCTTCCAGAAATTCAGACGCAACAGAGGTTAGGCCAGTTTGGTGGGTTCCAGTGAGCGGTGTGTTGAGCCTAGTAGAGCATAGGTACTTGGGGTTGCCAAAACCCCAGCAAGTTGAGGCTTCACGCTCAGGGAAACTTCTGGGTCAGAGGTTAATAACCACGCTCCTTGGAGCAAGGAGGAGGGGAGCCTTTCTGACTAGCTGAAGTAATTGCAGGTTTCTAACTGGGCCTAAGGTGAGCTGAGGGCTTGAGCCCCTCAGCCCAGCGGGGGTCCCTTTTCATCCCTTCTCTGACAGATTGCTTTGTAAACTTTCTTAGGCCTTCCCCCCACCCCTTTGCCCCAGTGCTTTAAGCCCTTCTTTGTCTTCTTGCTGTTTCTTTTATTCCTCAG
Seq C2 exon
GCCTGCGGGGCGGGGGCGGGGTGGCGCCCAGGACGACTCCCCGGGCTCAGCTTGGCTGCCTGCCTCCTTCTGTAAGTGCTTTTTTTTTCTTCACCTGGGACCCTCTAGAGGTTGGAAAGAGAAGAGAGGCTGGGAGCGGATGGAAAGCATGACTGCATCTGGAGCCCCTGGGGGGAGTGGGGAAGAGGGAGTGGAAGGACAGTGGCTGAGGGGCTTCCTGTTGCAGCCTTCAGCTGGACTCAGGGTTGGGGTCACTGGAGGAGGAGGTGGCTTCCTGCCCCATTGTTCTGGACTGCAGTGTTTCTTGGGAATACTTACTGTATGTGGATTTTCAGTAACCAACTTGGAAAGCTGTATTTGTTCCCATGATTCAGCAAACAATGAGTACCTACTGTGTGTAGAAGCAGCAGGACAGCCTGTCATCACTGGGAAAGAGGCCAGAAGAGCCGTTTGGCCAGGGTCTCCAATTTAGGCTTTCAACATTATCTCTAAAGAAGGTTATACATTATGTCGGCTCCACTGGCTGATGGGATCAAAGACCCTCCTTGTATATCCTTAAACCTGTACTCTATTACCAGGCCACTGTGCCTGTGGAGCACTGTAAGTTCCTACCTTTTAATAAATTTTATAATTATCTTGTGAGCAGCACAATTGTCATAGTTTTTTGTATCAGAAACATTAATTTGTTAAACATTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000249087:ENST00000454117:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGAAGCCGAAAACCCGAG
R:
CAGTCATGCTTTCCATCCGCT
Band lengths:
344-1969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains