HsaINT1047487 @ hg38
Intron Retention
Gene
ENSG00000178187 | ZNF454
Description
zinc finger protein 454 [Source:HGNC Symbol;Acc:HGNC:21200]
Coordinates
chr5:178942685-178946485:+
Coord C1 exon
chr5:178942685-178942824
Coord A exon
chr5:178942825-178946358
Coord C2 exon
chr5:178946359-178946485
Length
3534 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GAATGAATTTGCTGTTGCAGGAA
3' ss Score
7.41
Exon sequences
Seq C1 exon
CAGGTGTGTGGACCCTTCTAGCCTGAGGAGTCCTGCAGGTGTGAAGCTCCACACCTGCCTCCATAGCACTTTGCCTGTCCCTAAGAGGGCTCATCGGAGAAGAAAGAATGGCTGTCAGCCACCTGCCAACCATGGTCCAG
Seq A exon
GTGAGTGGGGGTTTCTTCCCCCTAAATTGCTTTCTGGATTTGAAGAGTGTGGCATGTTTGCTTCCTCAGACCGGGAGCTTTATTCCCAATCCAGTCCCACCCAGACACTGACCTCAGTTGCCTCTCCCCAACCAACACCCTCCAACCCCGCCCCATATCCGGCTCATCCTGGTGGGTGTTGCAGCTGTATAACTTGCTAAAGGTCACATAAATGTCACAGCTGGGACTGGAACCCAGGTCCCTGTGAAATCAAAACCTGTACTCTTTTCACTAGCAAGTAAGATTAGGGATCTGAAGTGGTAAAAGCATGTATTAGTCCCTTTTTACATTGCTCTAAATAAATATCTGAGGCTGGGGAATTGATAAGAAGTTTAATTGGCCCACGGTTCTGTAGGCTGTACAGGAAGCATGGTGTCAGCATCCACTTCTGATGAGGACTTTAAAAGCTTCCAATCATGGCAGAAGGTGAAGGGGGAGCAGGTGTATCACACGGTGAGAAAGGGAGCAAGAGAGAGAAGTGGGAGGTCCTAGACTCTTAAACAACTGGATCTCACGTGAACCAACTGAGCGAGAATTCACTCATCACCAAGAGGATGGCACTAAGCCATTCACGAGGGATCTACCCCCATGATCCAACACCTCCCACCAGGCCCCCCCTCCAACATTGGAGGTCACATTTCAACAGGAGAGTTGGAAGGGACATACATCCAAACTATATCAGGGCAGTATCTCACACAGAGCTCAAAGAAGGGCATTGTAGGAACACTTTTCTGGGGAGGTGTGATTTACTAGACTCTTTTTCTTTTATGACATTTGGTTTTTTTACCAATGAAATTATTCAAAAGACTATTCTGCCAAAAAGTCCTATAAATTCCTAAAACGCTTTGAGCAGTCCTAGCATCTTTAGAATAAGAATATGGGCCAGACGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCCAGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAATTACAAAAAAAATTAGCTGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGCAGTGAGCCAAGATTGTGCCAGTGCACTCCAGCCTGAGTGACAGAGCGAGACTCCATCTCAAAAATAAAAAATAAAAAAGAATATGGACTGTGCTTTGAAGGAGACAGCATTCATTTGGGCATATACATTCTGATACATTTGGTTAAATTGTTCTAATTCCTTCACATTTAAACCTCCCCAAGGACTGGGATGTGTGGCAGGAATCACTGGAAAGGATGACCAGCTAGGTGGGAGCGCCATGTTCAACATAGCACAGCTCACCGGCTGTTCCCCTCCTCCTCTTGGCTTCTGACTTGTCACTTAGGACCCTTCTCATGCACCACTTTTTCTGCAAAACCTGTCCGCACCCACAGTGCCAGTCTACTGTGATATTTTCCTTCCTTAACCTTTTCCTCAAAGTCACTGTCGGTGTCATACAATTTATCTTGTGTTTATAGGCTGCCTTGATTTGGTTGCCATTCAGCAGACATATGTTAGGGCTGTAAAATGTGCCAGGAATTATGATCTGGGCTACAAATACAAAGTGAACGATAAATGGGCCCTGACAAATTGGTTCATGGCTTCCATCCAAGTGTTTCTTGACTGCCTGTCATGGGCCAAGTCTCTGGGTGCAGGTAACGGAAACCTAATTCAGACTGCCTCAGGCAGAAGCAGGCACTGACTGGAAAGATATGGAGGTGTTCCCCCAAATGCAAAGGCAAAGACACAGCTAGATGTTGACTGTGGAAGTGGGATCTACAATAACCTGAGAGTCCTTTCTCTTGGACCTTTGGTTCCTTCTCTGGGCTTCTGCTTACCTCTTTTTTCTCAGTGAACACCAGCTCCCTTAACTTCTCAGCCAACTGGGAAGACAAGAGCTGTGATAGCTACTGGATTTTACATGCTAGGTTAGGTTTCGGCTACACCTGTGTGTCAGGACAGAGAGACTTTCCTCTGTGACCCCCTCTCAGAGTTTCTAAGAAAGGGACTAGTTCTAATCAGAAGGAACAAGTTTCCTATTGTGCAGAATGACTGGTTCCATGGGACCCATGTGTGTGTATGCACATGTGCACACGTGTGCATGTGTGTGTGTGTGTTGAGGGTGTGTGTCACAGGGTGTGTGTGGGGGTATTTGTGGGGGGGTGTGTGTGTTCGGGTGTGTGTGCGCGCTTGCATGTGTGCGTGTGTGTCGTGTGTGTGTTGAGGGTCTGGGGGATGTGTAGGGCTGTGTCTTTGTATGTGAGTTTGTGTGTATGTGTCTGTGTGTTTGTGTGTGTGTCTCTGTGTGTGTATTTGTATGTTGGGGTATGGGTATGGGTATGTGTTGTGTGTATGTGCATGCGCACTTGTGTGGTACGTGTCTGTCTGTGTATGTTTGTGTGTGTTTGTATGTGGGTGTATGGATATGGGTTGTGTGTGTGTGTCTCTGTGTCTGTGTGTGAGTTTATGTGTGTTTGTGAGGGGTACGGATATGGGTGTGTGTATGCTTGTGTGTGTATGTGAATGTGGGGGGGGTGTGTCGTGTGTGTGTATGTGGAGGGATATGGGTGTGTATGCTTGTGTCTGTGCATCTCTGTGTGGGGGGTGTGGGTATGGGTCTGTGTTTGTATATAGGTGTATGTGTGTGTCTGTGTGCTTGTGTATGTGTCTCTGTGTGTAGGGGGTGTGGATATGGGTGTGTGTTTTGTGTGTGTGTGTATGTGGAAGGGTATGGGTATGTATGCTTGTGTGTGTGTGTCTCTGTGTGTGGGGGGGTGTGGGTATGGGTGTGTGTGTGTGTTGAGGATGGGGAGGTACACACTGAAGAAAAGCAGGAGTTGCTGAGCAGCCACAGATAGGTGTCGAGTACATGGGCCGTGTTCCAGATGCAGGGAAGGCCAAGAGATGTAGAGACAGACAGTCCACATCTTGGAGTTAACAGTCCAGCGGGGGAGACTGAAGGTAAACCAAACATCACAATAAAATGGGACAGTGTCTTGATGGGCCCTCATAGGCAACTGTAGGAGCCATCAGGGAAGGCTGCGCTGAGCGAGCGGTGTTGAGTGAGCCGTGTCTATGCTGAGACCTGCGTAGGATTTGGTCCCCTGGGGTGAGCGGAGAGGCAGGGCTAGGCGGTTTGAGGGAGATGGAGAAAATGTTCTGGGCTAAATGAATGGCAAGTTGGAAGTCCCAGTGCTGAGAAAGCCTATCTTCGCCACCATATATGTTTCTTCAGCGTGGAGAGCAATGTCTAGTCCAAGGCTAGGCCCCTAGGAGACCCTGAAGAGTGATGAACTTGTCACAGAACGCCAGCTCCCTGTGTGCCAGCAGTCCTGTAAATGCGCACAAGCTCCTAGGGGCTGCCAGTCTCTTTTCCAGAGAACCATGTGCAGGGGTAGCCCCTGGTCAAGGAGAATGAATTTGCTGTTGCAG
Seq C2 exon
GAATCGGTGACCTTCAAGGATGTGGCTATACTGTTCACCCAGGAAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAGGGACGTGATGCTGGAGAACTACAGCAACCTGGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178187:ENST00000320129:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains