HsaINT1047539 @ hg38
Intron Retention
Gene
ENSG00000167785 | ZNF558
Description
zinc finger protein 558 [Source:HGNC Symbol;Acc:HGNC:26422]
Coordinates
chr19:8822629-8824417:-
Coord C1 exon
chr19:8824082-8824417
Coord A exon
chr19:8822725-8824081
Coord C2 exon
chr19:8822629-8822724
Length
1357 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
AGCATTCCCGTTTCTTCCAGAGC
3' ss Score
7.93
Exon sequences
Seq C1 exon
GAATTCAGGAGCAGCTTGGCTGGAAGGCTCTGGCTGGAAACTTGCAGAAGGCTGTCAGCTGGGTCTGCATCATCTGAAGGCTCAACGGGTACCGGGGGCCACTCCATGGCCTGCGAGTCAGAGCTGGCCGTCGGTGGGAGGCCTCAGTTCCTCTCCACATAGGCCTCTCCACAGGGCCACTTGAGCGTCTTCCCACCATGGCAACTGGTGTCCTCTAGAGCAACATCCAGGAGACCAAGGCGGAAGCAGCTGTAGTGCCTTCCAAGACCTGGTCCTGAAAGTCACCCCTGCACCCACCCCCGCTGTCTCCTCAGCCATATTCTGCTGGTCACACAG
Seq A exon
GTCAGCTCTAATTCCGTGTGTGCGTCGGGCCTACACAGGGTGTGAGCACCGGGAGGCTGGGATCGTCAAGGGCTCGTTAGGAAGCAGTTACCACAGAGGGGACAGGGGAGGAGGTGTGAAGTTTAAAGAGAGGAGAGGAGGTTTGACGAGTGGGAAGCCATGCTGACCTGTGGGATCGCCCTGCAGGCTGAGGGTTCTCTACACGTTGGTGACCGTGTTATTCCAGAGTGGCAACGTCACAGCCTTTGCACAGGGTGGTCTGCCCGAATGTCCCCTGGAGCAGGTGGATGATTGAAGTCACGCCTGGCTGGAGTTCTGCTGGGCTGGCATGACAGTGGGGGGTAGGGAGGAGGAAATCAGCTGAAATGAGGGACAGTGACATCCAAGCTGGGTGAGGATGAAATCAAGAGAGGGGGTGGCTGAGGCAGGAGAGGGGGTGACCAAGGCAGAGCATAGGTAGGAGAGGGGCTGACTGAGGCAGGAGGGGGGTGACTGAGGCCGAGCACAGGCAGGAGCAGGGTGACCAAGGGCAGGAGTTGGGGTAACAGGCAGAACATGGGCAGGAGAGGGGGTAACTGAGGCAGAGCACAGGCAGGAGGGGGGTGACCAAGGCAGGAGGGGGGTGACCGAGGCAGGAGGGGGGTGACCGAGGCAGGAGGGGGGCTGACTGAGGCAGGATGGGGGTGACCGAGGCAGGAGAGGGGTTGACTGAGGCAGGAGGGGGGTGACCGAGGCAGGAGGAGGTGACTGAGGCCTGCGTGTGGTCGGAGGACATGCGGTGAGAGAAAAAAGGAGTGAACGCCGTGGAAGTTGAGGAGGGAGGTTGGGTTCAGAGAGAGGGGAGTTTCTGAACGTTGTTCTGGGTGGTGGGACAGTGCCCGGTGATGACCAAGGCTGAGGGGACCTGTGGAAACATGTGGCTGATGAGAGAAGGAACAAAGGGCCCTGGAGCTGAGGAACTCCTGAGACTCTGGGGGTCTCTGACATCCTCCAGGAGCTGGGACTGGAGGTGGGAGGAGTTATGGAGGCGCCGGAGTCCCCGGGGAAGGAGGGAGTAGCCGGGAATGCGTTTGTGGTGCGCTTGGATGGGAAGAACATGCCGTGAGACTGCGTGAAGCCGAGGTTCTCAAAGCGGGTGGGTCAGGGAGGTACTGGTCGTTGTGTTGGGGACAGAGGAAGGCAAGTTTTCCATCAGGTGGCCCTGAATTCATTGCCTGCTCAGCAAAATAAAGGCCCAGTGTGGAAGCCGGAACTTGCATTTGAAGAAGGATGGGAAGGATGGGTTGAGGAGGGCCCATCCCCAGCAGCCCGAGAGGGAGGAGGCCACGGAGACTTGGAGCATTCCCGTTTCTTCCAG
Seq C2 exon
AGCGCTGCGGGATAAAGGAGGAGCGTCCTGCTTCCCGGCTGCCCTGTTGCTGTCGGAGTCACAGGATGGCGGCTGTCATCCTGCCCTCGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167785:ENST00000601372:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTGGGTCTGCATCATC
R:
CTGTGACTCCGACAGCAACAG
Band lengths:
347-1704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains