HsaINT1047637 @ hg38
Intron Retention
Gene
ENSG00000196110 | ZNF699
Description
zinc finger protein 699 [Source:HGNC Symbol;Acc:HGNC:24750]
Coordinates
chr19:9305072-9309573:-
Coord C1 exon
chr19:9309350-9309573
Coord A exon
chr19:9305125-9309349
Coord C2 exon
chr19:9305072-9305124
Length
4225 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TCCTGCTTTTCTTCATGAAGGCG
3' ss Score
5.58
Exon sequences
Seq C1 exon
GCTGGTCCCAAACTCACTGAATCGGGAACTCTGGTCTGGGTACAGAAATCGGGGTGATTCTGATGCAGGCGAGAGTTGGAGAACCAATGTCGTAGTTCATCAGCCTCCGAAAGCATCCTTTGCTCTCTTTCCAGAAAGGAAGAGCATCTCTGCCATTCGTGTCTCAAGGACAAGCGCTTCAGCCTCGTTCTCTGTGAGCTGATCTGTGGATCGCGGCGTGTCGG
Seq A exon
GTGAGCACGGGGTGACATTTGCCTCGGCTCGGTCCCCTCCTGTCCCCTCTTTATGCATTAGGTAGTGTTTGGGCCAAGCGCGGTGGTTCACGCCTGTAATCCCAGCACTTTGGGCGGCCGAGGCGGGCGGATCGCTTGAGCCCAGGAGTTTGAGGCCAGCCTGGGCAACATAGCAAGATCCCGTCTCTACCAAAAAAAAAAAAAAAAAAAAAAGTAAAATAAAAGGTGCTCTCCTGTGTTCCCAGCTACTCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCATCACTGCACTCCAGCCTGGGCAACAGAGCGAGACACTGTCTCAAAAAAACAAAAAGATAGTATTTGGTCTCTGGATATTATATTCTGCCTGTGGACATCAGTTTGATACATTATATTCAAGTGAAAGTGAACTGATGCATTTTGTCATTAATGATGCATTTGAATCATTTGTCTATAGATTGGTTAAATTTCACACAGAAAATTTGGTCATCTGTCAGTTTCAATCTTTTCCCTTTTTATTCCTTGCAGTTTCCATTTCTTTTCATTTCTTTACTGCACTTGCCAGGACCTCCAGTACAATGTCCGACAGAATAGCATGTAATTTACATCCTGTCTTGTTTCTGATTCCAGAGGGAATTATTCTATCATTTCACCATTAAATAGGATGTTTGCTGTAGGTGTTTGTAGGTTTTTTTCCTTTCTTTATTCCTATTTCTTTTTAGAAAATAGGAGTCTCGCTCTGTTGCCCGGGCAGGTCTCGAACTCATGGGCTCTCCGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACTGCACCCGGCCTGACCGTGTTTTAAACCGCTGATTTTTTTTTCTTTAATTACTGGGTGTAATCAGGTTTTAGATCACTGCTTGAAAGTTGTACTACTTTCTAGAAATTCATTAATTACCTGTGCATCTTCATATTTATTCCTTAAATTTTTTCTATATTCTCCTTATGATATCTGTAATTATGATTAATTCTTGTTCATTTTTTTTTTGTTGTTGTTGTTTATGCCCTGTTGCTCTTAAAATTGCTGAGTCTGTTGCTGGCTGCAGTGGCGCATATCTGTAGTCCCAGCTGGTGGGAAGCTAAGGCAGATGGATCGCTTGAGCCTAGGAAATGAGATCAACCTGGGAACATAAAGAGTCTGTCTTAAACAATAAATTAAATTAAAAAATTTTTTTAAAAAGCTGAGTTTGTCAGTTTCATTAGTTTTTCTTTTTGCAAAGGATGCTTTTTTAGCTTTTCTGATTTTGTTTACTATGTTTTAAAAAAGATTATTTTCTATTTTCTTTCTAAACTTTTATGCTGGTCTTTATTCAACTTTATATATCAATAGTCTAGCCTATTAATACCGATTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTGTGTCTCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAACAATTCTCTGCCTCAGCCTCCCAAGTAGTGGCGATTACAGGCACCTGCCACCATGCCCAGCTAATTTTTTTGTATTTTTAGTAGAGGTGGGTTTCACCATCTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACCGTGCCTGGCCAGTACTGATTTTTTTTCCTCTAGGAGTTGATAATGCTTATAAATATATAATAGATATACTAAACCCTCTGAAATTCCAGCATGATCTGAAATAGTTATTTTAATTTTCTGCTTCTACCCTGCCACATTACCTGTCCTGACTTGCTAAAGATAAATATGTTACGTGTCTCCTTATCCCTATAATGTGCTACATTTTTTATATAGCATGTATCTCTACCTGATGTATTTTGTTTAATGTCTTACCCAAAATATTATAACATTCATTTGCTTCAGGATTTTTCTTTTTTATTTTTCTATGCCTTATTCCTTGTGACTTCATGTAGTAGGGTCAGGATAAATGTCACCTAAATAAACATGAAACGAAGGAGGTAAGGGCTATAAGGGAAGCATCGTTGCCCAAGACATAGGCCTTAGGAAAAGGAGCTCAAAGATAACATATTTGATTATTTATTTATTTTATTTATTTTGAGACAGAGTCTGGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGTGATTTCGGCTTACTGCAACCTCTGCCTCCTGAGTTCACACAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGCTGTGCGCCACCATGCCCGGCTGATTTTTGTAGTTTTAGTAGAGACAGGGTTTCGCCATTTTGGCCAGGCTGGTCTTGAACTCCTGACCTCATGTGATTCCCCCGACCTTGGTCTCCCAAAGTGCTGGGATTACAAGCATGAGCTACCACGCACAGCATATTTGATTAGAATGCTTCATTTGTCCACTCTCTGTAGTGCCCAATAGGGTTCTAGGCTAAATCCTGGTAAAACTAGGGAATAAGGGGCTTAAAAACAATTAAAATTTAAGGTATGTGTTCAAAAATGTACTCACTGGGTGTTTGGGTTTTGAAGACAAATAGGCCTGCATTCATACCCTGCCTCAGCAGCTGTCTAATTGGGTAATATTGAAGATGTGGTTAATTGACTCATTCTAAGATAATTCTAAACTGGTTGTAATAATATTTGATTTGCAGAGCTTCTGTGAGAAATATTCTAAAATGTGGCCATTTCTTTGCAAAGTCATTCTCACATCAGGGTTGTCCAGATGGCATATATTGTTACTAATACAGCAAAGAATGTTACAGTTTTTTATTGGCTTTTTAAAATGCTACTTGTTCCACTGCAGTGGAAGTAACTGTTAACATGTCGTTGTTTGAAATTTGTGAAACAGCACTGCAGATACCACATCAGGGCTGACACAGGTCAAGTGTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTACAGTGGCGCAATCTCGGCTTGCTGCAACCTCCGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCTTGCGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAAAGGAGGGGTTTCACCATATTGGTTAGGCTGGTTTGGAACTCCTGACCTCGTGATCCATCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCTTGGCCAAGTATTCTTATTCTGCTACTACTGTACTGTGCAGGCAGATTTAGCATGTGTATCACAGCATAGCGGCCTTCTCTGCCTCCAGCATATGGAATTCAATAGGCTGATGCTTGGCCAGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGGATCATGAAGTCAGGAGATTGACACCATCCTGGCTAACACGGTGAAACACCGTCCCTACTAAAAACACAGAAAAATTAGCCAGGCATGGTGGTGTGCACCTGTAATCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGTGGAGGTTGCAGTGAGCTGAGATCACACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAAAAAAAAAAAATAGGCTGATGCTCTTTCTCAGGTTTTGGGGAACCCTGCAGCTCATGGGGGCAGGGGCAGTGGTCTAGGGCTGAGCAGCAAAGCCTGTTAGCCAGCCAAGGGGTGCAGAAGTAAGAAATATCGGGAGTGGAACTCCCAGAAGCCTGGCATATAAATCAGTGCTTTCTTGAATTTGAGATGGGGAGTGTTTATTCATGTTTTGGAAGATACTCCCTGATACATTTTATACTTTTTGTTATCATGGGCAGATTGACAGCCAGACTTTTCTAGTCTTCAGTTAACTTACAAAATAGCACTCTTAACCTCTTCTTTATGATCAACAAGGACCAGAGCACTGTTTTGTATCTCTAGGGGGACGTAAGGTTGTTCCACTTTCCCACAAGAGCAGGGTATATTTACTTGGGTGTCTTGGGTGTGTGCATGTGTGTGTGTGTGTGTGTGTATGTGTTTTGAGGGGAGTTGTTACTTATAATTGATGGGCTGCAACATCCAGGCTCATGAGTGTGGGAATTTTGGGGAGGTCTGGATTCTCATGTCACCTTTTTTAATTCTAACTTCTCAATATCCTGCTTTTCTTCATGAAG
Seq C2 exon
GCGACATGGAGGAAGAAAGAAAAACTGCTGAGTTACAGAAAAATAGAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196110:ENST00000591998:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.562
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains