HsaINT1047656 @ hg38
Intron Retention
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:HGNC:32467]
Coordinates
chr7:64312808-64314153:+
Coord C1 exon
chr7:64312808-64312851
Coord A exon
chr7:64312852-64313872
Coord C2 exon
chr7:64313873-64314153
Length
1021 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTACATCTTCTGTCACTTAGGAT
3' ss Score
7.93
Exon sequences
Seq C1 exon
GGTGGCCAACTTGGGTGTCTTCCTCTGCCAGGGTCAAGGACAAG
Seq A exon
GTCAGTGATATTATGCTCCCTTCACCCAGTTATGCCCAGTTACATTGACCTGGTACCCTGGATAACTGGTGTGAGTCAAGCTGGTCCAGTGCTCCTGCCACCTCCAGTAAACTCTGATTCTAGATTCACTCCCTGCTGCAACACTCACTGTGTGTGGAACCTTGGGCATGCAGCCAGGCCTCCCTGAGACTGTTTCTCAACTTGAAAGTGTGATGGGAACCACACCTACCTCACTGGGCCTCGTGAGGACTCAGTTATATGTAGCCGTCACCATTGTTCTCATCATCATCTCTCTCAGGAAGAGCCAGGCACAAGCACTCTCAAATTTTTCTCCTTTGAAGCTCCTCATTACCCTGTGAGGCTCATCATCCCTACATTTTTTAGATAAGAAAACAGAGGCCCAAAGAGGGCAGTGACTTGCCCAGGGCTCTACAGAAGAGGCCGGCTCCTCCCCACACCTGGAGGCCCTGACCTAGCTGACTTTACCCCACAGCCCAGCACTATCCCTGACTAGGGTCCCATCTTGGTTCTCCATGCTTGTTTAGGTCCTCAGGCAGGCTCAGCTTTGGTGGGAAAGAGACAGGGTGTTTTGGGAGGCCTGGGCGAGTGGCACCTCTAACCAATCTGCTAGGCCCTCACCTCTCAGTCTCACTGAGACACTCCATTAATTGGAAGCAGACCCAAAATTGCTTCACAGACTGAAGGTGATAATTGTCTACAGCCAGCTGAAGCAGCTGCATCTCCTGGAGGACTTTGATCTCCTGCAGCTAAAGGGAAAGACAGGATGCTGAGACAGGGCCTGCAGCATACACATAACTATAATTCAGAATGTAATATATACACACACACGAAAATATAATCAGAAAGTGATATAATCTTATATGCAAGGTTAAATACAAATGTCTCTCAGGCAGGGCCAGGCCCCCAGCACAGGGAGGACTCGCCTGAAAACGCTGCAGGCAAAAACCTGTCACCCTTGCCTCATTCAGCCCAGTGTCTGATTACATCTTCTGTCACTTAG
Seq C2 exon
GATTGAAACGGGTGGGGCCTGGAGCCCTAGCCAATCAGTGGCGCCAGCGTGAAACTGTCCAATCAAGTGCGCAGCTACAGAGGAAGAGGCGGCCTCTTCAATATGGCGGGGCCTTTGTCTCCTAGCTTCCGGGCTCTGATCCTAGTTCGCGTCTCCACTGTTCCATCTCCTCCGTTCCTGGAGTTCCTCGGTGACTCTACTATAGCTTCTGTTATCCTGTGACCTGCAGGTACTGGGAGATCCATAGGGAGGACGGCGGAACATCTGGAGGCTGGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444:ENST00000355095:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACTTGGGTGTCTTCCTC
R:
TTCCCAGCCTCCAGATGTTCC
Band lengths:
318-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains