HsaINT1047674 @ hg38
Intron Retention
Gene
ENSG00000196597 | ZNF782
Description
zinc finger protein 782 [Source:HGNC Symbol;Acc:HGNC:33110]
Coordinates
chr9:96852853-96854488:-
Coord C1 exon
chr9:96854088-96854488
Coord A exon
chr9:96853070-96854087
Coord C2 exon
chr9:96852853-96853069
Length
1018 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
TTGTTCTCCACTCTTTACAGATG
3' ss Score
10.57
Exon sequences
Seq C1 exon
TCGAGACTCCCGGGAAGCGGTTTGGGAAGCTCGGGGGTCGGCTCGGAAAGTAGAGGGGGCGCAGCTGGGGCGGGAGGACAGCGTTTGTGCCCGGAAGCGGGAGAGGAAGCGGGAAGTTTGTGGGATCCCCGCCCCCTGTGTCAGTGGATGCGACCGGGCGGGCCCTCGGCCTTCCCGGCCGCTGGAGAGGGACTTCGGCCGCTGGCTCCCGGGGCGGCTGAGGCTGAGCGTTGGTCCGGAGCAGGTGCCGGGTGCGGGCCGCGGTGTGCGGGACCGGAGCCCGGCGCGAGCGGCGGCGGGGGTGGGGAAAGCGCATTTGTAACGCGGGCGACAACGTGCCCGAAATCCCCGGACGGTGGGTCTGCATCGAGACCCCGAGCTCTGGAGCTGGAAAAACCCGG
Seq A exon
GTAAGTTCCATCTCTGTCAACTGGAAGCCGAGGCGAATGTAGGGACGTGGATGAGAGTCAGGTTTCTCATCTGAAAGTGAGGGTATTAATAATGACTGCTTCATGGCGTTGGTTTAAAACTTTAAGTCACCACCTGTAAAGCAAACAGCCGACTGTAGGCTACTAAGCCATGAGCGGACTGCTGCTGTTATATTTAGAAGACACTTTGTTCCATTCGTTGGGTGCCTATGTATACCTCACAACCACATCTGCATTAAATATAACTGAGGCTCAGGTCACAAGCTAGCAGTGAGGGAGCTGGGGTTCAAAGGCAGGTGTGATTTATTTCCCGTTTCAGGCGCTAATATCACACCTGCCTAAAACCAGCATTGCAGCCTTCACAGCACTTAGCAGAATGTCATGTCCCCAAATACTCAGGGAGTGGATGTAGATGGAATCTTACCATGTGTCAAATGTAGTCTGGATTTCTGGTGTGTCTTCAGATCTCTTGGGTCAGACAGGTTCCTGGCCCCTTCTGCATTGTCAGGGTGTCTCTCTTTTAAGTCTGATGTAAAGAATTCTAAGAGTCAGATTTTTGCCACTAACATGGTTTCTCAGGTCAGGTCGCAGGCTCCTTGAACAGAGCAGCCCTTGCGAGGTGGGAAGCAGGGGTCTCTGTGAACAGTTTTACCTGGAAGAGAACACCTCTCAGACCTAGGCCTCCCTCCCGAGCTTCAGAGCAGAGGCAGAAGAGCCCACAGAGGAGCAGATCCTAGATGTGTATGGTCAGAAGCAGTTCTTGATCCTCCTTCCCAGAATGAGCCAGACTTGGTGAAGCCTCCAGAAGCCACCACACAATGGGTGACAGTGGGTGGTTTGGGCCAGCTTTGAGAAGAGCAAAATGGGCTAGGTGGTGGCCAGGGACAGGCTGCTCAGGAAAGGCCACATCATTGCATAGGTCTGAGGGTAGGGGTAACCGGAGATTCTGTCCCCAGATCCCAAAGTAGCCCCCAGTCGCTTTGTTCTCCACTCTTTACAG
Seq C2 exon
ATGCCATACTGCTGTTAACATATGTGACACTGGAGACTTTGTCCCTACCTCATAGAATCCCATGCATGATGATACATGAAGGGTTTTCCGTGGCTATCTACTTCTGATTCTTTTGAAAGCTTTAAAGACATTGGGCATGAAAGGTTCAGTGAGTTTCCGGGGATCCCTCGTTTGTGGTAGAGCCAGGAGGAAAACAGTTCCGTTCATTCTTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196597:ENST00000481138:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGGAAGCGGGAAGTTTG
R:
AGGGACAAAGTCTCCAGTGTCA
Band lengths:
348-1366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains