HsaINT1047697 @ hg38
Intron Retention
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:HGNC:13159]
Coordinates
chr12:133047955-133048848:+
Coord C1 exon
chr12:133047955-133048081
Coord A exon
chr12:133048082-133048752
Coord C2 exon
chr12:133048753-133048848
Length
671 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATA
5' ss Score
4.95
3' ss Seq
TGTGATTTTTCCCTTAACAGGGT
3' ss Score
10.69
Exon sequences
Seq C1 exon
GAGTCATTCTCATTTGACGATTTATCTGTGGACTTCACCCAAAAGGAGTGGCAGCTACTGGATCCCTCTCAGAAGAATTTATACAAGGATGTGATGTTGGAGAACTATAGCAGCCTAGTGTCACTGG
Seq A exon
GTAATAAAAGCTTTCTTGAGGACCTTGGACTATGCCCAATGCATTGCCTTTTATTTTTAGTTGCTGGGAAGTTTCAGAAGCCTATAGCTAGGCTTCTGAAATTTTTAATGATTTTAGACCTGAAACTTAGATCACAGTTGCTTGGACTATGACACCAAGAAAGTATTTGGGTCTCACCTTTCAATAATGAAGTTGTAAGTTTGTCATGCAGCCTCTGAAACTTAAGTAGTAATAGTTTGAGCAGTAGTGATAGCACCTAATGCATATAACTTACTATATGCCACATCTTATACCAAGTGCTTTACGTATATCAACTCATTTAGTCATCAGAGCAATCCTATGTGGCAAGTACAGTCATTATCCATTTTTCCTGATGAGAAGATCGAGGCCAAGAGAGGTTAAGTAACTTTCCCAAGAACTAACAGCTAGTAAATTAAAGAGCCTGGATGTAAACCCAGGCTTACTGGCTCCAGAGCCTCTGAAGTGTTCAGTGGCTTTGTACTAGACCCTATTAGCCACCAAGGGAGACCGTTACTGTAACTTTGAGAATTACTTACTCTGTTGGGGTACAGCTTCACCAGGCCAACTTTGATGTGAAACCTTGCTCAACTTTAGAGGCCCTAAACCCCAAGCAGTTGGGCCCAAGGCCTTTGTGATTTTTCCCTTAACAG
Seq C2 exon
GGTATGAAGTTATGAAACCAGATGTCATCTTCAAATTGGAGCAAGGAGAAGAGCCGTGGGTAGGAGATGGAGAAATTCCAAGTTCAGATTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040:ENST00000327668:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCATTCTCATTTGACGATTTATCT
R:
CTGGAGAATCTGAACTTGGAATTTCT
Band lengths:
222-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains