HsaINT1047699 @ hg38
Intron Retention
Gene
ENSG00000197608 | ZNF841
Description
zinc finger protein 841 [Source:HGNC Symbol;Acc:HGNC:27611]
Coordinates
chr19:52093846-52095765:-
Coord C1 exon
chr19:52095575-52095765
Coord A exon
chr19:52093972-52095574
Coord C2 exon
chr19:52093846-52093971
Length
1603 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GGTCTCTCTCTGCCGCCTAGGCT
3' ss Score
5.28
Exon sequences
Seq C1 exon
ACACCCGGAAGCAGATCGCGCTGGGGAAAGGCCACGTCGCTATGAGTGTGTTTCAGTCTACCTGGATTAAACGTTTGCTTCTCTTCGTCTACCTTGATTAAACGTGCACTTCGCAGTCCTCGGTTCTCCATACCCGTGACCTGGGGATCGCTACGGACCTTAAAATACCCGCAACAGCCCCTTCGTCCCAA
Seq A exon
GTAAGTAGGAGAATTGCTTCCCTTTCGGTTTAAAATCTCTCTGAGGCCGTTCCTTGCTCTCTGCCTTTCTTCCTTAGGACCATGTAGACAACCCCATTCAGGTAGTGTTCCCGCTTAAAACCCTCTGCTTGGGCCCCGCGCCAAGTCGAGTCCTCATTCGGGATGTGGACTAGCGCCCTTCGCGATCCCCGAGCTCCTCCGTCGTCTGCCCCTGGAGGGGAGCGCCCACTGTCCGGCTCCTGAAGGAGCCGCTTCTCCTCCCACGTCCTGGGATTCTGCAGACCCTCCCTGTCGTGAGACATCGTTCTCCGCGCCACCTCGTGTCGTCCTCACGCCGGGTCCTTCCGCTCCCCAGGCTTCCCCTTCACAGCCACTGCTTTTCTTGACTCCCCGTTGGGACAGGTTACCTGAGTCTGTCTTGTGACACCCAGTGTTCTTCCTTCCCAAATTTTACTCCACTGGAAAATGTGCTCTTCCGGGAGGTGGGCATCCTATTCCTCCCCTTTCCTCCCGAATGTGTGGGTGAGAGGGATCAGGAGAGGAAAAGACGGGGAACGACGGAGCAAAAGGAAAAACTGAGGAGAAAAGAATGAGGGAGACCCATAAATACACGGCAAAATGGATGATACTTTAGGGACTTGCAAAGAGAGCAAGAGTGAAAGAGAACGGATGGAAAAAGTAGCAGGGGGAGAAAAGCACACAGAGAAATTTAGAAAAAAAGGGGACCTTCAGAGAGATGAAGGGCAGCAAAATAGAGTGGGGCGGCAAAGGAGGAGGCACTGCAGACAGACAGACAGTGGGGAGAAGGTGAAAGAGTTGGAGCCGCGGCTGACAGAGCTACGTGGTGCTGGGACTGAAAGAGAGGGAGAGAGGGCAGTGGGTGACAAGCAGAGTAGAGGGAGAACCACAGCAGGGAGTAAGCCTAGGAAATTGGGGGTGCTAGAGAGTGGGAACAAAGGAGATGTAACAGGGAAGAGGGAATTTAACAAGGAGAGCAGAGAGGGAGCTTAGATGGGGGAAAAGAGGCAGAAATACGTGGAGATTGGGGACAATCGGAAAGATTGGGGAGAAAGAGCTACGAGAGGTGAAGTAAGTTGCAGAGCATTGGGCAGAACAGACATAAAAGAGGGAATAAAGAAAGGGGTGCAAAACAGAAAAGGAGAAAAAAAAGACGCTCAGAATGAGAGAGGGAAACACATAGCCGTGAAGAAAGCGGGAGAGGACCCCATCCAGATGCGTGACAGTTGATTGGATATGGATGGTGGTTGTAATATATTGATTTGTGGCTTTATACTCTGATTTGAAATATGTTTAAGTTGTACTCATGAGGATGAAAATCACCAAAGTTTTTTCTATAAGCCTTGTGCATTTTGTATGTATTTGTATCAAAAGATATTTGGAATTCCTATTTAGCCAGAGGGCAGTGACTTGATCCAGTTATTTGTGGTAACTCTCTTCTTCCCAATGATGGAGTAGAGCATAAAGGAGGGGAGAAATGGGGCAAGAAATGACTGACTGTCACTACAAGATATGTCTTTGGTGTTTTTTTTGGCTTTGTTCTGTTTTGTTTTGGGGGGGGACATGGTCTCTCTCTGCCGCCTAG
Seq C2 exon
GCTGGAGAGCAGTGGCATGATCTCGGCTCACTGCAGCTTCTACTTCCTGGCCTCAAGCAGTCTTTCCACCTCAGCCTCTCAACGCACTGGAATTACAGATGTGAGCCACCACACTAGGCCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197608:ENST00000426391:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCGGAAGCAGATCGC
R:
CTTGTAGGCCTAGTGTGGTGG
Band lengths:
316-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains