HsaINT1047701 @ hg38
Intron Retention
Gene
ENSG00000197608 | ZNF841
Description
zinc finger protein 841 [Source:HGNC Symbol;Acc:HGNC:27611]
Coordinates
chr19:52084787-52089002:-
Coord C1 exon
chr19:52088937-52089002
Coord A exon
chr19:52084879-52088936
Coord C2 exon
chr19:52084787-52084878
Length
4058 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
AACATATTTTTGACTTTCAGATT
3' ss Score
9.22
Exon sequences
Seq C1 exon
TGGTCCTTACACCAGATTAATTTATCTTGAAATGGCGGGCAACTGAATCGCACACCTCAATCTATG
Seq A exon
GTACGTATTAAGCAAGTCAACATGTTCTTATAATGTCATGGCTTTTCTCTACTTCTTGGGAGCACTTCCAGCATCACTAGTGGCACTTCAGATGGGTCCTGTGTTGTTATTCAGAGTTTATCGTATTGCACCAAACAATGAAAAATGTGCCAGAACCACAGAGATCAATTTTTACTGCGGTCTGCAATTTACTAGAGAGATTAACAGTTCACATGGAGATGATTAACATCACGGGGCACATTAAGCAGGTACCTGAGCTCACCACAATAGCAATGGGAGGTGGCTATGAAATTATTATAGAAGTTCAGTATGTAGTACAGTTCATTAATGCAGTTATGATTGAATACTGCGTCTTTACATTTTTTTACATTTATTTTGACTGTAGATGGAACCATATACAGTCTAGAGGTGTTTATATAAATTTGGTACATTTTAACTTAGAATAGATTTGTGTGTGTTTTATGGTACTAAGTGATAAAATAGACTAATAGTTACATATATTTTATGCATTTCTGGCATACCTTTTTCTTAATTAGGGTACATGGTTCATCTGTGAGTTTTTTCAAATTGTTGCAAGTCTTCAAAATATTTTTCAGATGTTTATTGAAGTAAATTCTTTTATAAATGGACCCATACAATCCAAACTCATATTGTTCTATCGTCAACTGAAGTGAGAAGCAAGGCCTAAGTGGAGTCCACAGGGAGGTTGGGCAGCTGGAGGGTTGGTTCGTTGGTCTTGAGAGCGTGGAACCCAGAACTGTACTGCCATAAGCACTTTTCATGGTGACTTCTGCGGGGTCTTTTGGGAGTGCAGGAATCATGCAACTTACCGAAGTATTATCTGGAAAATCACAGAGATCATTTAGGGGGGCTACCTTTGTTTTTTTTTTTTTTTTTGGAGTATTTTGGGCTGCACGTTAAGATGGTTATAGATGCATTTTGGATGCATTATCTAAATGTCAATATGGAGAGTTTCCTTGGAAGATGTTGGGGTCTCATTGGGGCATGTGTGCATCATTGAAGATATCTGTTTTAGTAGATAGTGGTGCCAGTATTCGGGGGTGGGGTCATTACAGGCATGGACCACCGTGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCACGTTGGCCAGGCTGGTCTCAATCTCCTGACCTCAGGTGATTTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAAGTGTGAGCCACCGCGCCGGGCCTCTCTGTTTATTTTTTGGAGTTTTTTTTCCCCTAAACCTGGCCCATTTCAAGGTTCAGTTTGATAATGTGGCACTCAGCACAAGAGACTTCATTCTGGCTTGGTCTGGTAGTTCGGGAGGCTAGTCCAAAACAACAGCCTTCCCATAAAAAACAATGAGATCATGTCCTTTCCCAGGACATGGATGGAGCTGGAGGCCATTATCCTTAGCAAACTAACACGGGAACAGAAAACCAAATACTGCATGTTCTCACTTACAAGTGGGAGGTAAATGATGAGAATACTTGGACACATAGAGGGAAACAACACACACTGGGATCTACCTGAGAGTGGAAGGTGGGAGGAGGGAGATGATCAGGAAAAATAACTTATGAATACTAGGCTTAATACCCGGATGATGAAATAATGTGTACAACACATCCCCATGACCCATTTACCTATGTAACCAGCCTGCACGTCCTGCACATGTACCCCTGAACTTAAAATATAAGTTAAAAAGAAAACAACGAAAATACTTTGGGCTTCCATAAAATTTGTTTAACTGTGTCATTCATTTTTACTTCTACAGAATTACTTTAAACAGTGTTTACTGATGGTGGTGTATTGCCCATTAAATGCATGCACACACACAGACCCTAAAGCCTCTAGTTTCCTTCCACTGTGCCCTAATTAAAACAAAACATACCATTAACTGTGTTTCTGCCTGTAGTGAGTACCCCTCTTCTGTGCTTCATTTAAGACCATAATACAATACAATCTTGTTCAGAGTCTCTGTCTTCACTTGTTGCCTCCAATTGTGTCTTGAATGCATTGGATGAAACTTTCATATCCACCATTCCACTGATAACTTTATTTTTCAGAGTCACCAGTGACCTCCCCATTTCTAAATCCAATGTATTTCATTTCCTGCTTTACTCTTTCTTTGCCTGTCAGGAGCTATTTGATTTTCTTGTCACCTCCCTGACCATTTCACACTTTCCTCTGCTGCTGTGTCCTGACTCTGAATGTTTCCCAATGTGGGAATGACTCATGGCTTAGTCCTTGAACCTCTTCTTGTTTCTGTCCACACCCACTGTCTTTCCTCATCATCTCATCTTATGAATTTAAACCCCACTGTATTAGTCCATTCTTGAATTGCTATAATGAAATACTGGAGACTGGGTAATTTATAAAGAAAACAGGTTTAATTGGCTCACAGTTCTGCAGGCTGCACAGGAAGCATGGCGACATCTGCTTCTGGGGAGGCTGCAAGAAGATTCCAGTCATGGCAGGTGAAGGAGGAACAGGCGTCTCACATGGCGGGAGCAGGAGCAAGAGAGAGTGAGGGGGGAGGCGCTACACACTTCTAAACAACCAGATGTCGTGAGAACTCACTATGATAAGAACAGCACCAAGGGGTGGTGTGAAACCATTCATCACAAATCCACCCCCATGATCCATCCACCTCCCACCAGGCCCCACCAGTAACAGTGGGGATTACAATTCAGTGTGAGATTTGGGCCAGGGACACAGAGCTGATCCATATCACCCACCTACCCACCTACACGTCTCCATGTCCCCTGCAGACCTGTCCCCTGAACTCTAGAATTCTGTGTCCTTTTGTCCTCTCCTCTCTCTGCTTAGCCATCTAACAGGTATCTCCACCAAAAGTGATTGCCTGAACTCACCAAGTACATTCCCCTGCACTCCTGCACATCTCAGATGATGGTGACCCTGTACTTCCTGGCTTTAGCTTTACATGTCAGCATATATTTGAAACAGAGAAAACATGACATTAAAAAGAAGTGCTTTAATTCATGTGATAAAGAAAAGTTATGTTTACTTAAAAAGGGTGAGGAAATGCATAGTTTCTGAAATTACTGTGAGCTGTGGGAGAAAGATGTTTGAATACCTCATCTCTACCTAATCTGCTCCCCAGAACCTCTCTGACCTCATCTCCTCCCTGTGTCCTTCCTGCTCCCTCTGCTCCAGCCACACAGGCCTCTTTCCTGTTCCCTGGGCTGAGGTTGCTCCTGCCTCAGGGCCTCTACCTGGGCTGTCTGGCCCCTCAGCTGCAGGTGCAAACATCCTTCCTTCTTGAGGTCTTTGTTCTGATATCACCTTCTCCATTGGGACTTCTGTGCCTCACCCTCCTCTCACCATTTAACACTCCAGCCACACCCTCACCCCACCCCTGGTGCATATTATGTGTCTCTGTGTTTCTGGTCCATTGTGTTCTACTGTCTACAAACTGGTAACAGTGAAGCCCCAAGGGGACAGCAGAGCTGGGAGGATGGGGCTGTGCTAGTCTTGCCCCCTTTAAGATGTGTTCAACCCTGGCTTCACATTAGCGTGCTGAGGCAGTTTGCAAATACACGTTTTGTGCCCTTTTACCATAGATTCCACTTCCAGTAGGTAGGATGGACTCAACCTCCATATTGTTTAAAGTACCCAAATTGATTCTAATTTGTATCCAGCATTGAGCGTCCAGCCTTTGTGTCTTCTGTTTCTGAGAGCTGAGCTCAGCCTGTGATCCACAGGGAGGTGAGGGGGCTGTGCTCTGTATGGGGTTTGATCAGGGATGGGTCTGTGTCCTGAAGGGAAGCATAGTCCAGCCCAGCTCCCCACTGTTGCAGGGTGTGTGGGGGCTTCTCTGGGAGGGGAACAAGTTCTGAAGAAAAGGGTGAAAAACTTACTTGGTCTTTGTGTAGGAGTTTATTATGCTTGCATCCCCCTGGTGCACTGGGCTGTCTCTCCACATGCTGAGGCCTTCCCTGTGGGCATGGTTGTGGCACAGAAAGGAATGTGTTGTTTCCAAGGATTAAACAACATATTTTTGACTTTCAG
Seq C2 exon
ATTTGACTTTTAAAGAATTAATTATATTGACTGAGAGAGAGGCCCAGGAGAGAAAGAAGAAAGAAAAGGAGCCAGGGATGGCTCTTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197608:ENST00000426391:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains