HsaINT1047857 @ hg38
Intron Retention
Gene
ENSG00000205810 | KLRC3
Description
killer cell lectin like receptor C3 [Source:HGNC Symbol;Acc:HGNC:6376]
Coordinates
chr12:10412312-10415794:-
Coord C1 exon
chr12:10415704-10415794
Coord A exon
chr12:10412617-10415703
Coord C2 exon
chr12:10412312-10412616
Length
3087 bp
Sequences
Splice sites
5' ss Seq
ATTGTGAGC
5' ss Score
3.78
3' ss Seq
ATTTTCGTATTTTTTTGTAGAGA
3' ss Score
8.57
Exon sequences
Seq C1 exon
GATAAAAGACTCAGATCATGCTGAACGTAACTGTGCAATGCTACATGTACGTGGACTTATATCAGACCAGTGTGGATCTTCAAGAATCATT
Seq A exon
GTGAGCATAAGCTTTAGAATTAAAGCGCTTGAGCTTGCAGTGCATCAGATAAAATTTTATATTTGTTCAAACAGAAATGATATTATGATTGCATAAGCCTTAAAATGAATTGTGTTATTTGCTCTAATAATAAGAAAATTCCAAATCAATTATTGAAATATAATACACACAATTACGGAAGTACAGATACCCTCGCATTTAAGTCAGGCTCATTTTGCTGAACGTGATGTTTGTGGCATTCAGGCTTCCTAAAAGTTGCATGTTATGTTGGTCAGTTTATATGAAGTATCAAGAACAAGCAAAACCATGGAGACAGAAAATAAAATAGCGTTGCTAATGCCTAAGGGAGGTTGAAATAGGAGGTGTCCACTAATTGCTAGAATGTTTCTTTGTGTCAGTGATGAAAACTTTCTAAATTTCAGTAGCAGTGATGGTTGTAACTCTGTGAATACACTAAACATCACTGATTTTTAATCATTTTAAGTGGATGAAATTTATGCTATGTGCACCGTACCTCAATGAAGCTGTCCAAAACAAAAATATATACTGTCCTGGGATTGCTTGAGTCTGCATTTAATCTCTAAAGTAATTTTTAAAGATTAGCTTCTTGACATTTCCATACAATATCATATTGTGTCCTTCAATGTACTGGGTTCAATGTATGGGGTTTTCTTTAATTTCTCTCTATCATATTATGTATTTTGGGGGTTTGAATCATACAGAAATGCAGATATTTTACATTCATGCTTTTGTAAATAGCATTCTGATTTTAATATTCCCTTTAATAACTTTTGTTACTGTAAATAGAAATACAACTGATGTCTGCATTTTCACTTATTTTACATATTTAAATCTATCATTTCAAACAGATTTTTCTGGATTTTCTATATAAACAGCAATTTTATTTTCTTTTCTTTTTCTTTTTTTTTCTTTTTTTATTATTATTATACTTTAAGTTTTAGGGTACATGTGCACAATGTGCAGGTTTGTTACATATGTATACATGTGCCATGTTGGTGTGCTGCACCCATTAACTCGTCATTTAGCATTAGGTATATCTCCTAATGCTATCCCTCCCCCCTCCCCCCACCCCACAACAGTCCCCTGTGTGTGATGTTCCCCTGCCTGTGTCCTGCAAATAATCACACTTTTATTTTTTCTATCCATGTGCCACAACTTATTTTTTCTTCATTTATTTTCTCTGGCTAGTACTTTATATCCAGAGTTGAATAGAAGGTACAATCAAATTTTACATGTATCATATGTATCATTTTCTGGTTTTGGCAAAAAATAATTCAACATATTATTCATATTTACAAAGTTTGGTGTTTTTTTCATCATATCTTTCTTATATTGAAGTGGTTTTATAATATTCCTTTTTTCAATAGATGTTATCAATTGTAACATTTTTATTTTTTATTACTTAGAATGATATATGTTTTCTTTATACAACATTTTATAAAATAATTTTATTTTTGTCAAATGTTAAACTAGGCTTTGTTTCCGAAACAAATCCATGCTGATCATTGTATATTGCCCCTTATAAAATATCAGTGCACATACTACTATATCTAGGGTAAGATATGTTTCTTCATCTATGTTCACAAGGATATTTGACCACGTTTTTATTTGTAGCTATGTACTTGAAAAAGTTTTGGTCTCAAGGCTATCTTGGGAAGATTTTCTGTTTCTCTATAACCTGGAAGCATTTGTTAAGAGTACTGCTTTAGCCATAAAAAAGGATGAGTTCATGTCCTCTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTATCACAAGGACAGAAAACCAAACACCGCATGTTCTCACTCATAGGTGGGAATTGAACAATGAGAACACATGGACACAGGGAGGAGAACATCACACACCGGGGCCTGTCGGGGGGTGGGGGGTTGGGGGAGGGATAGCATTAGGAGAAATACCTAATGTAAATGATGAGTTGATGGGTGCAGCACACCAACATGGCACATCTATGCCTATGTAACAAACCTGCACGTTGTGCACATATACCCTAGAACTTAAAATATAATAATAATAATAAAGAGTACCGCTTTATTTTTAAATGTTATCATTCACTAGTTATGCCATCTGAGTTTGCAGGCTATTTTTGTAGAAAAGTTTATGGCTAAACTGAATTTCTTCAATACATGTAGGGTTTACTCAGATTTCTATTTGAGGTACTATATTTTGGTAATGAGCATTTCCCAGGAATTTTCTATTTCATATGGACATTAAAATGCATTGATAATATAGTTTTATTGCCTGTTTAATAACTGTAAAGACCATAATGGTATTGCCATGTTTAAACTGGGAATAAAATATCTGTGCCTTTTCAAAATCTTCCCTTAGTAGTCCTTTGTGACCATTCATCTTGATAATTTCTTTGGCCCATATGTTATTTTGACATATATTACTGAATTAAAAACCATATAAGGTTCTCAGATTTTTGTTTATTGACTTCTGTTGTAGGTAAAATATAGTTAGAACATTTTCTATTAAACTGGAAATGTTCTTCATCCCTTTATAAATGTGGCTCATGTGGTGAGGTACTGGTTTTAAATGTTATTTATTTTTATTAATTAATGTTAAATTTGAATAGCTACATTTCAACTGTCTCCTAGCCAAGCTTGGCTAGCGGTACTACATTGAAATTGAGTATCCGTGTGAGTATATGTGTGTGAATGCATTCATATGAGTGATGGTTACTTGTCTAGTTTAAATCTTTCTATAGGCTCACTGGCCTGTCTTGTATTAAGCATCAAGAGAAGAGTCTTTAAAAATCCCATTTATGATTGTTTACTTGTTCACTTTATTCAACTATATGTTGAACTTGTATCATTAGGTATATGCAATGATAAAAAATATATTACTAATGGTTTGGAAAATTAATTTATCATTATGAAGTATATTTCCCCAATTTCAGTAAATTTCATCTCGGCTCACTGCAGCCTCGACCTCACCTCCAAGGCTCAAGCGATCCTCCCACCTCAGCAACCAGAGTAGCTGGCTACAGGCCAATACCATCATGCTGGCTAATTTTCGTATTTTTTTGTAG
Seq C2 exon
AGACGGGGTTTCATCATGTTGACCAGGCTGGTCTTGAACTCCTGAGCTCAAGAAATCAACACATCTTGGCCTCCCAAGTTGCTGGGATTACTGACACAAGCCACCGCCCCTGAGTGCTCATGTACCATTTAGCTTGTGTTTTAAAAATCTACTTTTTCTGCCCTCCCTATTTTTAACTAGATGATGTTTTAAAAATTACTTTTCCCTCTCTATATAGTTTGATTTAAGCATTAGTCATTTACAACAAATATTAATATTAAAATGCAGACCGTTATGATTGGAAAATAAATCAATGAACAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205810:ENST00000396439:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(32.3=100)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains