HsaINT1048124 @ hg38
Intron Retention
Gene
ENSG00000241404 | EGFL8
Description
EGF like domain multiple 8 [Source:HGNC Symbol;Acc:HGNC:13944]
Coordinates
chr6:32167350-32167656:+
Coord C1 exon
chr6:32167350-32167429
Coord A exon
chr6:32167430-32167502
Coord C2 exon
chr6:32167503-32167656
Length
73 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGGCATCTCTTCCTTTCTAGTGG
3' ss Score
7.1
Exon sequences
Seq C1 exon
TTCGGGAGGCGGAAAAAGATGAGCGCGCTCTGAAGCAGGAGATTCACGAGCTGCGAGGGCGCCTGGAGCGGCTGGAGCAG
Seq A exon
GTGAGCCAAGCCTGCTGGGTGGGGCGAGGCCAGACGTCACTGTCAATACCCTGAGGCATCTCTTCCTTTCTAG
Seq C2 exon
TGGGCCGGTCAGGCTGGGGCCTGGGTCAGAGCGGTGCTGCCCGTGCCGCCTGAAGAGCTGCAGCCAGAACAGGTGGCTGAGCTGTGGGGCCGGGGTGACCGGATCGAATCTCTCAGCGACCAGGTGCTGCTGCTGGAGGAGAGGCTAGGTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241404:ENST00000395512:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.090
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGGAGATTCACGAGCTG
R:
GTCGCTGAGAGATTCGATCCG
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains