MmuALTA0000124-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000044320 | 1700001O22Rik
Description
RIKEN cDNA 1700001O22 gene [Source:MGI Symbol;Acc:MGI:1923631]
Coordinates
chr2:30651702-30652086:-
Coord C1 exon
chr2:30651921-30652086
Coord A exon
chr2:30651732-30651803
Coord C2 exon
chr2:30651702-30651731
Length
72 bp
Sequences
Splice sites
5' ss Seq
CGTGTGAGG
5' ss Score
4.04
3' ss Seq
GGCCCCCCTCTCCCCATCAGGTC
3' ss Score
8.94
Exon sequences
Seq C1 exon
TCCGGCAGAATATCTTTCCGAGTGAGCAGACGGCTTTGCCAGCTGTATCTGTGTCAGAACGGGTGCTCGGGAGTGTTGGGAGATGGTTGGACAGTCTGCCCAGAGCCCTTTATCCCAGGGTCCAAGACACTGTGGCCGGCTCCTCATTCTGGACCTGCCCCCGCGT
Seq A exon
GTCAGCTCAGGAACCTCAGCTCTACCTTTCTGAGGACTCCTCCGTGAGCAGCCACCTACCCTTCATCTCCAG
Seq C2 exon
GGCCACCATCCCAAGGCCACGGGGAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044320-10-11,10-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTTTCCGAGTGAGCAGACG
R:
CGTGGCCTTGGGATGGTG
Band lengths:
176-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: