MmuALTA0000729-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000062260 | AA415398
Description
NA
Coordinates
chr4:119204109-119206154:-
Coord C1 exon
chr4:119205918-119206154
Coord A exon
NA
Coord C2 exon
chr4:119204109-119204209
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AACACACACCTTTAATCCAGATC
3' ss Score
4.91
Exon sequences
Seq C1 exon
CTGTCCTGATGACCATTGCTGCTCAGGGTAAAGGCTGTTCCATCTGCAGCAGACCCAGAATGGAAAACATGTGCAGCAAAGCCACAGCAGACCTGGGAAAGACCCAACAAATGAGGACAACCACCCATTGGACCACTGAGAGAGAGCTGAGAGTCACGGCAGCAACGTAACAGAGCTTATACAGACTGTTTCTGAACCCTTTTCTGGAACGTCTTAAAGTGCTGGCATCCTTTCCAG
Seq A exon
NA
Seq C2 exon
ATCTTTGGGAAGACCCACCTATAATCCAGGCCATGCCTTCTGCTAGAGGCCTTATAAAGAACATGAAAGATGGAAGCCTCTGTCTTTGCCGGCTTGTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062260-5-5,5-4-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTGCTCAGGGTAAAGGC
R:
TGGCCTGGATTATAGGTGGGT
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: