MmuALTA0000729-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000087385 | Frg2f1
Description
FSHD region gene 2 family member 1 [Source:MGI Symbol;Acc:MGI:3035485]
Coordinates
chr4:119531663-119533549:-
Coord C1 exon
chr4:119533313-119533549
Coord A exon
chr4:119531733-119531761
Coord C2 exon
chr4:119531663-119531732
Length
29 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GGCTGAGGGTCTTAACACAGTTT
3' ss Score
-0.63
Exon sequences
Seq C1 exon
CTGTCCTGATGACCATTGCTGCTCAGGGTAAAGGCTGTTCCATCTGCAGCAGACCCAGAATGGAAAACATGTGCAGCAAAGCCACAGCAGACCTGGGAAAGACCCAACAAATGAGGACAACCACCCATTGGACCACTGAGAGAGAGCTGAGAGTCACGGCAGCAACGTAACAGAGCTTATACAGACTGTTTCTGAACCCTTTTCTGGAACGTCTTAAAGTGCTGGCATCCTTTCCAG
Seq A exon
TTTGCTTATACAGGAACATTTGAGTTTAG
Seq C2 exon
CCTTGAAAAATGAATGGGAGCTTGAAGCAAGACACATGGGAGAGTGGTTCCAGGAATTAAAGGCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000087385-8-10,8-9,8-8-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF153151=FRG2=WD(100=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCAACGTAACAGAGCTT
R:
CCACTCTCCCATGTGTCTTGC
Band lengths:
127-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types