MmuALTA0001081-5/5 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000006457 | Actn3
Description
actinin alpha 3 [Source:MGI Symbol;Acc:MGI:99678]
Coordinates
chr19:4868718-4869443:-
Coord C1 exon
chr19:4869358-4869443
Coord A exon
chr19:4868807-4869116
Coord C2 exon
chr19:4868718-4868806
Length
310 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AGCTTCTTCTTACCTTAAAGATG
3' ss Score
6.13
Exon sequences
Seq C1 exon
ATATCGTGAACACCCCCAAACCAGATGAGAAAGCCATCATGACCTATGTTTCCTGCTTCTACCATGCGTTTGCTGGGGCTGAGCAG
Seq A exon
ATGTCCTTCTCGGGCTGGTGAGATGGCTCAGTTGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAATGAGATCTGACTTCTGGAGTGTTTGAAGGCAGCTACAGTGTACTTACATATAATAAAAAAAAAAAAAAAAAAAAAAAAAGATGTCCTTCTCAGTTTGTTCATGGGCCAGGCTTTTAAGGGCTTTACTGAGAGGGAGGAAGGTTGGGGTGTCCAGGGTAGCTTGTCCTAAGCCCTCTTGTGCTCTCTACCTCAGGCAG
Seq C2 exon
AGACTGCTGCCAACAGGATCTGCAAGGTCTTAGCTGTGAACCAGGAAAATGAGAAGCTGATGGAGGAGTATGAGAAACTGGCCAGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006457-12-13,12-12,12-11,12-10,12-9-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(23.1=82.8)
A:
NA
C2:
PF0043516=Spectrin=PU(9.9=35.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types