MmuALTA0001114-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:101128927-101134694:+
Coord C1 exon
chr15:101128927-101129063
Coord A exon
chr15:101134607-101134675
Coord C2 exon
chr15:101134676-101134694
Length
69 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACAGTGATTTCCTCTGGTAGGAG
3' ss Score
5.63
Exon sequences
Seq C1 exon
CCCCTTCCCAGTCCCCGGAGGCCGCCGCGCCAGCCGCGCAGATCGAGACCTTTCCCGGCCCCACAGGCCGGCTCTGGACGTGAGACCCCGGCCGCCTCCGGCAAGGAGAGGCGGGGGTCGAGTCGCCCTGTCCAAAG
Seq A exon
GAGGAGACCTTGGTCACCACAGCTATCACGTTTTGCAGATCTCACCACATCTCTTCTCCTATCTCCAAG
Seq C2 exon
GACCATGACCTTGGGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-1-13,1-12,1-11-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCAGTCCCCGGAG
R:
GCTCCCCAAGGTCATGGTC
Band lengths:
154-223
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types