Special

MmuALTA0001115-1/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000000530 | Acvrl1
Description
activin A receptor, type II-like 1 [Source:MGI Symbol;Acc:MGI:1338946]
Coordinates
chr15:100966559-100968070:+
Coord C1 exon
chr15:100966559-100966658
Coord A exon
NA
Coord C2 exon
chr15:100967797-100968070
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
ACACCCTTCTGCTTACAGGCTTC
3' ss Score
-29.23
Exon sequences
Seq C1 exon
GACTTCCTGGACAGCGACTGTACTACGGGCAGCGGCTCGGGGCTCCCCTTCTTGGTGCAGAGGACGGTAGCTCGGCAGGTTGCGCTGGTAGAGTGTGTGG
Seq A exon
NA
Seq C2 exon
TTCATCGCCTCCGACATGACTTCGCGGAACTCGAGCACGCAGCTGTGGCTCATCACCCACTACCATGAACACGGCTCCCTCTATGACTTTCTGCAGAGGCAGACGCTGGAGCCCCAGTTGGCCCTGAGGCTAGCTGTGTCCGCGGCCTGCGGCCTGGCGCACCTACATGTGGAGATCTTTGGCACTCAAGGCAAACCAGCCATTGCCCATCGTGACCTCAAGAGTCGCAATGTGCTGGTCAAGAGTAACTTGCAGTGTTGCATTGCAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000530-12-17,12-16-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence exclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF085157=TGF_beta_GS=PD(82.8=70.6),PF0006920=Pkinase=PU(2.4=20.6)

							
A:
NA

							
C2:
PF0006920=Pkinase=FE(31.5=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000129438





     
                   









    
Main Skipping Isoform:
ENSMUSP00000000542





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000112490, ENSMUSP00000113297, ENSMUSP00000113505, ENSMUSP00000113536, ENSMUSP00000114027
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:52309009-52309010 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:28104323-28104324 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr7:37903943-37903944 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTTGCGCTGGTAGAGTGTGTG

				
R: 
GAGCCGTGTTCATGGTAGTGG

				
Band lengths: 
99-101

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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