MmuALTA0001183-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95685456-95687917:-
Coord C1 exon
chr3:95687821-95687917
Coord A exon
chr3:95685554-95685671
Coord C2 exon
chr3:95685456-95685553
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
3' ss Seq
CTTCTTGCTCCCACCCTTAGGTC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GGCGTGGGGCGGAGCCTGCCGCGGGCGGCGCTGTCCTGGGGCTCCGGGCCGCGGTGGCCACTACCAGAGGCAGCTGGAGAGAGCGGGCGCAGAGAAG
Seq A exon
GTCCTAAAGGGGTGGACCATTCCTCCCCCACCCCTCCAGGCTGTTGGTGTTGTGCTGAGACAGCCCTTCAGTCCCCCCAGATAGCTGGAGGGGTAACGCCATGCTCCTCCCTCCTCAG
Seq C2 exon
AGCACCCTCCAAGCCCCGATGCCAGAGTAGCCACCCTGTCCCCTGCTCCCCAGCCCAGGGGCAGTCACAGGAAGAGCAATGGAATCTTGGCTGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-0-4,0-3,0-2-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGGCCACTACCAGAGG
R:
CCCAGCCAAGATTCCATTGCT
Band lengths:
141-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types