MmuALTA0001185-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000015850 | Adamtsl4
Description
ADAMTS-like 4 [Source:MGI Symbol;Acc:MGI:2389008]
Coordinates
chr3:95485575-95486269:-
Coord C1 exon
chr3:95486133-95486269
Coord A exon
chr3:95485745-95485779
Coord C2 exon
chr3:95485575-95485744
Length
35 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CCTCACCTCACTCTCCCCAGAGC
3' ss Score
9.1
Exon sequences
Seq C1 exon
TTCAGGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTCTATGTCCGACACACTGAAAAGGTGCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGACATCTGTGTGGCTGGACGCTGCCTG
Seq A exon
AGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAG
Seq C2 exon
GCGTCCGGATGGCTGCGGAGTCTGCGGGGGTGATGGTTCTACCTGCCGCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGATCCTGTGGATCCCTGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCGACCCAGTTCCAATTACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015850-9-11,9-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(35.3=59.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCAGCCTGGATCCCTAG
R:
TCGGTCAGTGAGATTTCCCGA
Band lengths:
123-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: