MmuALTA0001259-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020473 | Aebp1
Description
AE binding protein 1 [Source:MGI Symbol;Acc:MGI:1197012]
Coordinates
chr11:5766923-5767154:+
Coord C1 exon
chr11:5766923-5767003
Coord A exon
chr11:5767098-5767100
Coord C2 exon
chr11:5767101-5767154
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
CCTCCCCTTCTTGTTGTTAGCAG
3' ss Score
3.98
Exon sequences
Seq C1 exon
AGAAGCCCAAAAAGGAGGGTAGTAGCCCCAAGGAGGACACAGAGGACAAGTGGACCGTGGAGAAAAACAAGGACCACAAAG
Seq A exon
CAG
Seq C2 exon
GGCCCCGGAAGGGTGAGGAGCTGGAGGAGGAGTGGGCGCCAGTGGAGAAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020473-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGAGGACACAGAGGACA
R:
TGATTTTCTCCACTGGCGCC
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: