MmuALTA0001550-7/9 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026965 | Anapc2
Description
anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
Coordinates
chr2:25284562-25285172:+
Coord C1 exon
chr2:25284562-25284691
Coord A exon
chr2:25284845-25285071
Coord C2 exon
chr2:25285072-25285172
Length
227 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTACCTATGAGTTACACAGGAC
3' ss Score
0.34
Exon sequences
Seq C1 exon
GCTATGCGGACACTTAGTTGGAAGCACACCCTGGGCCTGGTGACAATGGATGTGGAGCTTGCTGACCGCACCCTGTCTGTTGCGGTGACCCCAGTACAGGCAGTGGTCTTGCTGTATTTCCAGAACCAAG
Seq A exon
GACAATCCACGTGCGTCTGGGGGTCCAGCTAGCTAACAGGTATTGGAGCAGGTATAATCTTCGGTACCTGCATCCTATGGCTCTGCACACAGCCAGCTGGACCCTGGAGGAACTGAGCAAGGTGGTGAAGATGCCTGTGGCACTGCTTCGAAGACGCATGTCAGTGTGGCTGCAACAGGGTGTGCTGCGGGAGGAACCTCCAGGCACTTTCTCTGTCATTGAGGAAG
Seq C2 exon
AGCGGCCTCAGGATAGGGACAACATGGTGCTGATTGACAGTGATGATGAGAGTGACTCAGGCATGGCCTCCCAGGCTGACCAGAAGGAAGAGGAGCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026965-18-35,18-34,18-33,18-32,18-31,18-30,18-29,18-28,18-27-7/9
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.291
Domain overlap (PFAM):
C1:
PF0088817=Cullin=FE(11.2=100)
A:
NA
C2:
PF0088817=Cullin=PD(15.9=77.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGGACACTTAGTTGGAAGC
R:
CAGTAGCTCCTCTTCCTTCTGGT
Band lengths:
228-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types