MmuALTA0001625-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118532202-118533466:-
Coord C1 exon
chr6:118533315-118533466
Coord A exon
chr6:118532348-118532369
Coord C2 exon
chr6:118532202-118532347
Length
22 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATGATTTGTTTTTAAATAGTGG
3' ss Score
5.32
Exon sequences
Seq C1 exon
GTTGAAGAAAAGAGAAAATACAAAAATAACGAAGCAGAACCCTCAGGAAATCTATACAGCGGTGCTGCTGACGGCGGTGCTGATGTAAAGCCACAGAGTGGAGACACTGAGAACCAGCAGTCTCCCCGGGAGGGGAGTGAGGGACGTGGCAG
Seq A exon
TGGTCCTGCCTTGCTTATGAAG
Seq C2 exon
GAAGCAAAGAAAATGGAAAATGAAAAATGGGTATCCAGAGAGCCCGCGAGGACGGCAATGAGTGAGCGCACCGGCTTACCAACTGGTGGCTGGCCACAAATGCAGGATGGTTCCTGCTGGAGTGACACGGACCAAAGTGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-22-25,22-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGAACCAGCAGTCTCCC
R:
GCTCACTCATTGCCGTCCTC
Band lengths:
114-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types