MmuALTA0001645-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5530705-5532212:+
Coord C1 exon
chr11:5530705-5530798
Coord A exon
NA
Coord C2 exon
chr11:5532142-5532212
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTGTATGTGTGTTTCAGCAGAAG
3' ss Score
6.22
Exon sequences
Seq C1 exon
AGTGTCTCTGAGAATCTGCTAAACAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAG
Seq A exon
NA
Seq C2 exon
AAGTGGATTCGGAGGGGACATCACAGCTGGAACAAAAGAATCTTGACAGCAGCGAGAATACTCAGCCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-21-23,21-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCACAGATCAACAAGGGC
R:
TCTCGCTGCTGTCAAGATTCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: