MmuALTA0001645-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5630702-5632209:+
Coord C1 exon
chr11:5630702-5630795
Coord A exon
chr11:5632136-5632138
Coord C2 exon
chr11:5632139-5632209
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GAACTGTATGTGTGTTTCAGCAG
3' ss Score
6.34
Exon sequences
Seq C1 exon
AGTGTCTCTGAGAATCTGCTAAACAAGTGTGAGGGGATTATATCTGATGCCACAGATCAACAAGGGCGATATCTAGATATGGAACAGGCAACAG
Seq A exon
CAG
Seq C2 exon
AAGTGGATTCGGAGGGGACATCACAGCTGGAACAAAAGAATCTTGACAGCAGCGAGAATACTCAGCCGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481-29-37,29-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCACAGATCAACAAGGGC
R:
TCTCGCTGCTGTCAAGATTCT
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types