MmuALTA0001658-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18817982-18818417:+
Coord C1 exon
chr6:18817982-18818096
Coord A exon
NA
Coord C2 exon
chr6:18818244-18818417
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TATTCTTGTTCCACTAGCAGGCA
3' ss Score
5.62
Exon sequences
Seq C1 exon
AACACCTTTGCATTTGGCCTGTGCTAATGGATATACAAATATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq A exon
NA
Seq C2 exon
GCAGTAGAGTGTCAACAGGAGAGTTGTGCTACGGTTCTTCTTCTTCATGGTGCAGATCCAAATCTGGTAGATGTTTATAGTAATACGGCTCTCCATTATGCTGTTTGTGGCCAAAATATTTCATTAGCCAATAAATTGCTTCAATATAAAGCCAATCTTGAAGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PD(68.5=94.9),PF127962=Ank_2=PU(1.1=2.6)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATAGTGAAAACAGAACCCC
R:
TGGATCTGCACCATGAAGAAGA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: