MmuALTA0001658-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000029517 | Ankrd7
Description
ankyrin repeat domain 7 [Source:MGI Symbol;Acc:MGI:1922446]
Coordinates
chr6:18867982-18868417:+
Coord C1 exon
chr6:18867982-18868096
Coord A exon
chr6:18868241-18868243
Coord C2 exon
chr6:18868244-18868417
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
ATTTATTCTTGTTCCACTAGCAG
3' ss Score
5.79
Exon sequences
Seq C1 exon
AACACCTTTGCATTTGGCCTGTGCTAATGGATATACAAATATTGTCTCTCTCTTAATTGAGAATCAATGCAAAATTAATGTCCAGGATAGTGAAAACAGAACCCCATTGATTAAG
Seq A exon
CAG
Seq C2 exon
GCAGTAGAGTGTCAACAGGAGAGTTGTGCTACGGTTCTTCTTCTTCATGGTGCAGATCCAAATCTGGTAGATGTTTATAGTAATACGGCTCTCCATTATGCTGTTTGTGGCCAAAATATTTCATTAGCCAATAAATTGCTTCAATATAAAGCCAATCTTGAAGCCAAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029517-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138571=Ank_5=PD(68.5=94.9),PF127962=Ank_2=PU(1.1=2.6)
A:
NA
C2:
PF127962=Ank_2=PD(24.5=39.7),PF127962=Ank_2=PU(52.2=62.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATAGTGAAAACAGAACCCC
R:
TGGATCTGCACCATGAAGAAGA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types