MmuALTA0002074-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24781843-24782247:-
Coord C1 exon
chr2:24782065-24782247
Coord A exon
NA
Coord C2 exon
chr2:24781843-24781965
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GTCAAGTCTTTCCTCAGAAGGTA
3' ss Score
1.26
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCCACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACTGGCAATGTGGTTCTCACAGCTAGCACTGACCTTCGTGGCTATGTGGTGGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
Seq A exon
NA
Seq C2 exon
GTATCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGTACAGGTGTCAAGGCCTGGAGGCGTGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-12-11,12-10-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGACATTGAGAACCA
R:
CCGCACATCATAGATCCAGCG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: