MmuALTA0002668-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127560080-127561044:+
Coord C1 exon
chr10:127560080-127560711
Coord A exon
chr10:127560788-127560821
Coord C2 exon
chr10:127560822-127561044
Length
34 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
GAGGCTGTAGCCTGAAGTAGGAA
3' ss Score
-5.59
Exon sequences
Seq C1 exon
GAGGCCGACCTCGAAAACCTAAGCCTGGGTCTCTGCAGCCTCAGCACCTTCAGTCCACCATTAGGGAATGTGATTCAGAGCAAGCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAGCTTCAGGCCCCTACCCAGCCCCATCTTCAGCCAAGTAGTGGGTTCCTAGAGCCAGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGACAGCAGCCCAGGGAAACTAGACTCTGCTCCGTCTCAGTCCTTGGAGGAGCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCCTCAAGGTCCCTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTCTAAACCA
Seq A exon
GAAATATGTAAACTCCTTCTTGTCTTCTTTGTAG
Seq C2 exon
ATGAATACACCCGGTGCTGCCAATCCTTGTTCCCCAGTGCAGCTCTCTTCCACTCACTTGCCTGGAGGGACCCCTAAGAGGCTATCAGGGGACTCTGAAGAAATGTCACAGAGTCCCACTGGGCTGGGGCAACCAAAGCGGAGGGGGAGACCCCCTAGCAAGTTCTTCAAGCAGGTGGAGCAGCATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-33-40,33-39-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGCTGCTCCTACACCAC
R:
TGCACTGGGGAACAAGGATTG
Band lengths:
124-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: