MmuALTA0003084-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98472047-98472521:+
Coord C1 exon
chr15:98472047-98472156
Coord A exon
chr15:98472370-98472422
Coord C2 exon
chr15:98472423-98472521
Length
53 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
AAACTGCTCCCCTTCCTTAGCTG
3' ss Score
6.23
Exon sequences
Seq C1 exon
GATCTCCATCACACGCGTCACGGCCGACCTCTCGCTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATTGAGCGCTCCTCCGCCCGCTCCAGCATTG
Seq A exon
CTGAAGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAG
Seq C2 exon
CTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAACTTGCCAAGACCTCACTGGCTCCCATCATCGTCTTTGTCAAAGTGTCCTCGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-14-16,14-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(20.4=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTGTGCTCAACAATCCT
R:
AAGACGATGATGGGAGCCAGT
Band lengths:
144-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: