MmuALTA0003146-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138180444-138182579:-
Coord C1 exon
chr1:138182486-138182579
Coord A exon
NA
Coord C2 exon
chr1:138180444-138180478
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
GTCTCGTCATTGCCTTTTAGATA
3' ss Score
7.71
Exon sequences
Seq C1 exon
CTGAGCCTGCAAAAGACGTGCCATCGGTTCCTGTCTTAAATGCTGCCAAAAGAAACATCCGGGATAGTTCATCTAGTTCTGACTTCTCCTCCAG
Seq A exon
NA
Seq C2 exon
ATATACACGGCCGCAGACTCATTCTTCAGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-11-16,11-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCTGCAAAAGACGTGC
R:
CTGAAGAATGAGTCTGCGGCC
Band lengths:
123-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: