MmuALTA0003384-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21797316-21798104:-
Coord C1 exon
chr9:21797982-21798104
Coord A exon
chr9:21797469-21797471
Coord C2 exon
chr9:21797316-21797468
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
ACTGTCCCCCACCCTCAAAGCAG
3' ss Score
3.95
Exon sequences
Seq C1 exon
AACCAGCTGCAGTATCTGGAGGAGTCTGCGATCAGAGATCGCAAGAAGCGCGAGCATTACATAACTGACTGCAAGAAGCGGGCAGAAGAGAAGAAACTTCAGACAGAGCGTATGGAGCGCAAG
Seq A exon
CAG
Seq C2 exon
ACCCACCGAGACCACGTATTGCTGCAGTCAGAAGATACAATACAGGACCACCAGCGCCACAGGGAGGAGGAGCTGAGGCAGCGCTGGAGCATGTACCAGATGGAAGTGATGTTTGGCAAGGTCAAGGATGCCACTGGAGTAGCTGAATCGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.549 A=NA C2=0.534
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(36.0=100)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGCGGGCAGAAGAGAAGA
R:
CGCTGGTGGTCCTGTATTGTA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: