MmuALTA0003648-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34910392-34910865:-
Coord C1 exon
chr18:34910768-34910865
Coord A exon
chr18:34910453-34910613
Coord C2 exon
chr18:34910392-34910452
Length
161 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
AGTGTTCTTCTCCTAGATAGCCC
3' ss Score
1.16
Exon sequences
Seq C1 exon
ATCGGTTTCTTCTGGTCAAGAGTGTGAAACTGCGTGGTCCGGATCAAGCCAGTGTTCTCTTCGTTCCACCTTTGAAGTCCTGAGCTTGCCTGACGTCT
Seq A exon
CCCCACCTCCCTCGGTGAAGACTCTGAAGTCATGTCTACAGGACCTATCCCACCTGCAAGTGAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGGTCCAAACAAAGGAAGATATTACACCTACTTTTGGAGAGAAACACTTCTTTTACCATCCGTTCAG
Seq C2 exon
ATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-1-5,1-4,1-3-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.562
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTTCTTCTGGTCAAGAGTG
R:
ACAGAATGCTTAGGTTTGCCGA
Band lengths:
154-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: