MmuALTA0003674-1/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112547674-112549777:-
Coord C1 exon
chr12:112549698-112549777
Coord A exon
NA
Coord C2 exon
chr12:112547674-112547724
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CTCCTGTCTGTTACACCAAGGAC
3' ss Score
3.68
Exon sequences
Seq C1 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
Seq A exon
NA
Seq C2 exon
GACTCGCTCTCTTCCTCATCTGCATCTTCTCTGCTAGCCTTGTGGGAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-21-28,21-27-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAACTTCCAGATTTCCAGGA
R:
TCCCACAAGGCTAGCAGAGAA
Band lengths:
126-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: