MmuALTA0003676-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:111295760-111296065:-
Coord C1 exon
chr12:111295948-111296065
Coord A exon
chr12:111295855-111295856
Coord C2 exon
chr12:111295760-111295854
Length
2 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
3' ss Seq
CAGATGTTTCCTTCCTGCAGAGA
3' ss Score
8.97
Exon sequences
Seq C1 exon
GAACAATCCTCAATGTGCCCGACACCTCGGACAACAGCAAGAAGCAGATGCTGAGGACACGGAGCAAACGACGTTTTGTCTTCAAGGTTCCCGAGGAAGAGCGGCTACAGCAGCGGCG
Seq A exon
AG
Seq C2 exon
AGATGCTCAGAGACCCCGAACTGCGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCTCACATGGGTCCTGGGGATGGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-58-61,58-60,58-59-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078623=PBD=PU(61.4=67.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGCAAACGACGTTTTGTC
R:
ATTTTGGATCGCAGTTCGGGG
Band lengths:
93-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types